PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558628.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 482aa    MW: 53559.8 Da    PI: 4.7475
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35221132102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++e++sws+ +nsfvv +  ef+k++LpkyFkh+nf+SFvRQLn+YgF+kv+ +          weF+++ F kg+k+ll++
  XP_010558628.1  22 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVRNVPEFTKELLPKYFKHNNFSSFVRQLNTYGFRKVDPDC---------WEFANEGFLKGQKQLLKS 107
                     9***************************************************************9987.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_010558628.1 108 IVRRKP 113
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3816106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-3417111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MESVRESVPA SVPPAVNSVP PFLSKTYDMV DDPSTNEVVS WSSGNNSFVV RNVPEFTKEL  60
LPKYFKHNNF SSFVRQLNTY GFRKVDPDCW EFANEGFLKG QKQLLKSIVR RKPAHVHNQQ  120
QPQVQNSSVG ACVEVGKFGL EEEVDRLKRD KNVLMQELVR LRQQQQATEH QLQNVGQKVQ  180
TMEQRQQQMM SFLAKAVQSP VFLNQLVQQQ SDGNRCIGGS NKKRRLPGED QEISSSHGAN  240
GLNGQMVKYQ PSMNEAGKAM LQQILKMSSA PKYDPFTNNA GSFLLDDIPS PNALDNGSSN  300
RVSEVTLAEV SPNPSFSCLS SAPTTNLQEP CKTDEVPKTN TSPQSRAETV QPKLAQKQRG  360
AAEESPDSDL VRSCGVDNGE SNLDPITAVL DGFMELEGDV DDMDEFLDGV PKLPVVHDSF  420
WEQFFAASPV TGDTDEIISG AMESIWVMEQ ESQPDQRNGG KNQQMDNLTE QMGLLRSEAQ  480
RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25911118129Heat shock factor protein 1
5d5v_B2e-25911118129Heat shock factor protein 1
5d5v_D2e-25911118129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558628.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558628.10.0PREDICTED: heat stress transcription factor A-1e-like isoform X1
RefseqXP_010558629.10.0PREDICTED: heat stress transcription factor A-1e-like isoform X1
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLV4N7P10.0V4N7P1_EUTSA; Uncharacterized protein
STRINGXP_010558628.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]