PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558707.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 346aa MW: 39687.6 Da PI: 7.3649

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	10	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+kkv ++++ + +i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ ++ XP_010558707.1 10 LPPGFRFHPTDEELILHYLRKKVLSSPILV-PIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIEAA 103 79***********************999.78***********988899***********************************97 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+vg+kk Lvfy+g+ pkg+kt+W+mheyrl XP_010558707.1 104 ndlgFPEKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 140 55554556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-62	7	180	IPR003441	NAC domain
PROSITE profile	PS51005	60.827	10	180	IPR003441	NAC domain
Pfam	PF02365	4.6E-28	11	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MIRKDPRSNL PPGFRFHPTD EELILHYLRK KVLSSPILVP IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKTI EAANDLGFPE KVGVKKALVF 120 YRGKPPKGVK TNWIMHEYRL SENLSPKTSG SNIGGDPNVK KSHDVSMRLD DWVLCRIYKK 180 SQASSSSSPV TIDQEQVEER EAFITRETFS PKLTFPHMAN EHTLKPQRSC SFSNLLDNTG 240 DFSFLANFLE ENPENHAEFE FPLMFGSSDF DYGDDYLDQK LPRLTSPPPE KFSGDNKRQR 300 SDFVEETMST SKKTMNTRSY NNTMDEFDHS FLNQHLLLSP HLKFQG

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MIRKDPRSNL PPGFRFHPTD EELILHYLRK KVLSSPILVP IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKTI EAANDLGFPE KVGVKKALVF  120
YRGKPPKGVK TNWIMHEYRL SENLSPKTSG SNIGGDPNVK KSHDVSMRLD DWVLCRIYKK  180
SQASSSSSPV TIDQEQVEER EAFITRETFS PKLTFPHMAN EHTLKPQRSC SFSNLLDNTG  240
DFSFLANFLE ENPENHAEFE FPLMFGSSDF DYGDDYLDQK LPRLTSPPPE KFSGDNKRQR  300
SDFVEETMST SKKTMNTRSY NNTMDEFDHS FLNQHLLLSP HLKFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-67	9	184	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-67	9	184	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-67	9	184	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-67	9	184	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	5e-67	9	184	19	172	NAC domain-containing protein 19
3swm_B	5e-67	9	184	19	172	NAC domain-containing protein 19
3swm_C	5e-67	9	184	19	172	NAC domain-containing protein 19
3swm_D	5e-67	9	184	19	172	NAC domain-containing protein 19
3swp_A	5e-67	9	184	19	172	NAC domain-containing protein 19
3swp_B	5e-67	9	184	19	172	NAC domain-containing protein 19
3swp_C	5e-67	9	184	19	172	NAC domain-containing protein 19
3swp_D	5e-67	9	184	19	172	NAC domain-containing protein 19
4dul_A	4e-67	9	184	16	169	NAC domain-containing protein 19
4dul_B	4e-67	9	184	16	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558707.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558707.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	1e-158	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A178VJ79	1e-156	A0A178VJ79_ARATH; NAC047
STRING	XP_010558707.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-158	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]