PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558708.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 329aa MW: 37208.1 Da PI: 7.3037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.4	3.9e-55	20	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yLk++v ++++++ +i e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ XP_010558708.1 20 LPPGFRFHPTDEEIITYYLKERVFNSRFTA-VAIGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIHKG 113 79***********************999.67***********99999*************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grap+gekt+Wvmhe+rle XP_010558708.1 114 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEFRLE 147 *****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-62	15	172	IPR003441	NAC domain
PROSITE profile	PS51005	58.558	20	171	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAVVEEGVVV SHGGQELVDL PPGFRFHPTD EEIITYYLKE RVFNSRFTAV AIGEADLNKC 60 EPWDLPKRAK MGEKEFYFFC QRDRKYPTGM RTNRATESGY WKATGKDKEI HKGKGCLVGM 120 KKTLVFYRGR APRGEKTNWV MHEFRLEGKY SYHNLPKSAR DEWVVCRVFH KNTTTPLMIK 180 KPFENLARMD SLENMDHLLD FSSLPPLMDT SFPGQPGPSF SGEFKPINHT PIYNNPTYYF 240 PHQPTLNPDS GPGSGWVYGS AYNASNNNNN KGMIKLEHSL VSVSTQETGL SSDMNATATP 300 EISSCPAAMM INGSKSYDEL GDLGILWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	7	172	2	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558708.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558708.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-164	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1J3DX94	1e-170	A0A1J3DX94_NOCCA; Uncharacterized protein
STRING	XP_010558708.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-151	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]