PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558713.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 397aa    MW: 44663.3 Da    PI: 7.0591
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.8e-3446100155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+Wtp+LHerFveav+qLGG++kAtPk+i+++m+++gLtl+h+kSHLQkYRl
  XP_010558713.1  46 KPRLKWTPDLHERFVEAVNQLGGADKATPKAIMKVMGIPGLTLYHLKSHLQKYRL 100
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.77743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-3244101IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-2446101IPR006447Myb domain, plants
PfamPF002494.1E-104899IPR001005SANT/Myb domain
PfamPF143799.3E-25147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYYHNQHQAK NTISTPRMPM PSERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFV  60
EAVNQLGGAD KATPKAIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS VSNKMGLMAM  120
AEEMSPDTSE IHTESLSIGP QTNKNLPISE ALQIQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQAVLEKA QETLGKQNLG TAGIEAAKVQ LSELASKVSA EYSNANFVEP KELQSLHPQQ  240
MQMTYPPDFS LDSSLASREG TQRSPKMLEN RLGLRPYLSD STTEQKEIAE EPLFQRMELT  300
WREGLRENKT YISPMADDRE TRLSSSERCP GNLSIGVGLH GHRGHGNADY AEERIKKDEE  360
RIQKGLDSTT ELDLNTHDGN YGTARPKQFD LNGFSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2246102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558713.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558713.10.0PREDICTED: myb-related protein 2-like isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLD7L2090.0D7L209_ARALL; Predicted protein
STRINGXP_010558713.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]