PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558715.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 391aa MW: 43901.4 Da PI: 6.8569

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.6e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPk+i+++m+++gLtl+h+kSHLQkYRl XP_010558715.1 46 KPRLKWTPDLHERFVEAVNQLGGADKATPKAIMKVMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.777	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-24	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-15	147	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MYYHNQHQAK NTISTPRMPM PSERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFV 60 EAVNQLGGAD KATPKAIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS VSNKMGLMAM 120 AEEMSPDTSE IHTESLSIGP QTNKNLPISE ALQIQIEVQR RLHEQLELRI EAQGKYLQAV 180 LEKAQETLGK QNLGTAGIEA AKVQLSELAS KVSAEYSNAN FVEPKELQSL HPQQMQMTYP 240 PDFSLDSSLA SREGTQRSPK MLENRLGLRP YLSDSTTEQK EIAEEPLFQR MELTWREGLR 300 ENKTYISPMA DDRETRLSSS ERCPGNLSIG VGLHGHRGHG NADYAEERIK KDEERIQKGL 360 DSTTELDLNT HDGNYGTARP KQFDLNGFSW N

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MYYHNQHQAK NTISTPRMPM PSERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFV  60
EAVNQLGGAD KATPKAIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS VSNKMGLMAM  120
AEEMSPDTSE IHTESLSIGP QTNKNLPISE ALQIQIEVQR RLHEQLELRI EAQGKYLQAV  180
LEKAQETLGK QNLGTAGIEA AKVQLSELAS KVSAEYSNAN FVEPKELQSL HPQQMQMTYP  240
PDFSLDSSLA SREGTQRSPK MLENRLGLRP YLSDSTTEQK EIAEEPLFQR MELTWREGLR  300
ENKTYISPMA DDRETRLSSS ERCPGNLSIG VGLHGHRGHG NADYAEERIK KDEERIQKGL  360
DSTTELDLNT HDGNYGTARP KQFDLNGFSW N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558715.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558715.1	0.0	PREDICTED: myb-related protein 2-like isoform X3
Swissprot	Q9SQQ9	0.0	PHL9_ARATH; Myb-related protein 2
TrEMBL	D7L209	0.0	D7L209_ARALL; Predicted protein
STRING	XP_010558713.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]