PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558742.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 332aa    MW: 36773.9 Da    PI: 8.7586
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1777127156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g+
  XP_010558742.1  77 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRGA 127
                     78*******************......55*************************985 PP
2AP239.91.1e-12169219155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW++++  +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010558742.1 169 SKFRGVTLHK-CGRWESRLGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 219
                     79********.7****995553..1.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-1677135IPR016177DNA-binding domain
PfamPF008472.1E-977126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1878134IPR001471AP2/ERF domain
PROSITE profilePS5103217.71478134IPR001471AP2/ERF domain
CDDcd000181.35E-1178135No hitNo description
SMARTSM003801.6E-3078140IPR001471AP2/ERF domain
CDDcd000182.95E-22169227No hitNo description
SuperFamilySSF541719.81E-16169228IPR016177DNA-binding domain
PfamPF008476.4E-8169219IPR001471AP2/ERF domain
PROSITE profilePS5103214.644170227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-15170227IPR001471AP2/ERF domain
SMARTSM003806.8E-29170233IPR001471AP2/ERF domain
PRINTSPR003671.7E-5171182IPR001471AP2/ERF domain
PRINTSPR003671.7E-5209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MWDLNDSPDE AAIVLQESEE KRKRVGSGSG FPVTREFFPV NKEQCGVVSD SSGSGRAEDT  60
SSPPTKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  120
AIKFRGAEAD INFDIEDYMH DLKQMSNLTK EEFVHFLRRQ STGFPRGTSK FRGVTLHKCG  180
RWESRLGQFL GKKYVYLGLF DSEIEAARAY DKAAIKCNGK DAITNFDPNI YEEELDSDTM  240
PHDTLDLSLG KSTCTGQNFR FGNEAKGPSE EKRNGGEGRL GSDLSLSIRA VGSGQQRQSD  300
GGGKPKSLVA TTAAASSGFR TPCWLHSHGL PL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558742.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558742.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-118TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM51e-118R0EWM5_9BRAS; Uncharacterized protein
STRINGXP_010558742.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-110target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]