PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558780.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

AP2

Protein Properties

Length: 411aa MW: 45132.9 Da PI: 6.6839

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	1e-17	133	182	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a++k++g XP_010558780.1 133 SPYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAALKFRG 182 68*****************......55**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.24E-15	133	191	IPR016177	DNA-binding domain
SMART	SM00380	2.8E-30	134	196	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.754	134	190	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.7E-17	135	190	IPR001471	AP2/ERF domain
Pfam	PF00847	9.1E-10	135	182	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MHLDLNLDIF TSAGESPAGE LHKGDGIEAE NPLEDSRIGS EEDSGTSSSS AITSSSSTTG 60 SGFISFGILR KDEITPRPEF SEFPAISTAG EKGFVLDMSN GRKWLNLSSW VCDGGDKPET 120 KRKSRRGPRS RSSPYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAALKF 180 RGMDADINFG ASDYAEEMKQ MKNLTKEEFV QVLRRQCNGG GGRNLYKYSK QWEAKPIQPP 240 VARGELFETP EIGYASGFGT NVYGIRTSFG SSSSQGDMEQ NLELSLGLFP RASRTAKAEP 300 GGGIELSRNY MGIMEARCDN PALLVGIYPD ILTNNQRVFE KRTKRDDDNN NNNNMGGCIR 360 EMGNGMNAAS SRFSSSSASS STGPYLPSST RNDASFTTQV EDLKLYTQKD H

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MHLDLNLDIF TSAGESPAGE LHKGDGIEAE NPLEDSRIGS EEDSGTSSSS AITSSSSTTG  60
SGFISFGILR KDEITPRPEF SEFPAISTAG EKGFVLDMSN GRKWLNLSSW VCDGGDKPET  120
KRKSRRGPRS RSSPYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAALKF  180
RGMDADINFG ASDYAEEMKQ MKNLTKEEFV QVLRRQCNGG GGRNLYKYSK QWEAKPIQPP  240
VARGELFETP EIGYASGFGT NVYGIRTSFG SSSSQGDMEQ NLELSLGLFP RASRTAKAEP  300
GGGIELSRNY MGIMEARCDN PALLVGIYPD ILTNNQRVFE KRTKRDDDNN NNNNMGGCIR  360
EMGNGMNAAS SRFSSSSASS STGPYLPSST RNDASFTTQV EDLKLYTQKD H

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269\|PubMed:14573523}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558780.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269\|PubMed:14573523}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558780.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
Swissprot	Q6PV67	6e-45	SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
STRING	XP_010558780.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	5e-35	related to AP2.7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li W,Wang T,Zhang Y,Li Y Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana. J. Exp. Bot., 2016. 67(1): p. 175-94 [PMID:26466661] Gras DE, et al. SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana. J. Exp. Bot., 2018. 69(3): p. 619-631 [PMID:29309650]