PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558832.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 25082.1 Da PI: 8.7911

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.3	9.6e-17	35	89	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +f++eq++ L+e Fek+++++ +++ e A++l+L+ +qV +WFqN+Ra k XP_010558832.1 35 QKKKRFSEEQIKWLKEIFEKEKKLDPRRKMEVARQLRLEPKQVAIWFQNKRASSK 89 67889***********************************************988 PP
2	HD-ZIP_I/II	96.1	3.7e-31	35	127	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+r+s+eq+k L e Fe+e+kL+p+rK+e+ar+L+l+p+qva+WFqn+RA k+kql +d+++L+ +yd l+++ ++ +e+++L +++++ XP_010558832.1 35 QKKKRFSEEQIKWLKEIFEKEKKLDPRRKMEVARQLRLEPKQVAIWFQNKRASSKSKQLQTDFATLRVHYDCLARDFQKSLEEKHHLLSQVQK 127 69***************************************************************************9999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-15	27	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	31	91	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.19E-15	33	98	IPR009057	Homeodomain-like
CDD	cd00086	3.17E-12	34	92	No hit	No description
SMART	SM00389	5.6E-11	34	95	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-14	34	89	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.9E-8	91	131	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEKQSYVHGE RERSYQWRNE DFDFSRNSNC KEEKQKKKRF SEEQIKWLKE IFEKEKKLDP 60 RRKMEVARQL RLEPKQVAIW FQNKRASSKS KQLQTDFATL RVHYDCLARD FQKSLEEKHH 120 LLSQVQKLRA QTSEKQRVKS LDQDSEVDRE IDNRDHGNRA GIEPDGKVGS SGESTKTAEF 180 GSTGSEDLLF KSEVYSWALS DKWAELLECL GF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558832.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558832.1	1e-154	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
STRING	XP_010558832.1	1e-154	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-29	homeobox 7