PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558851.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 235aa    MW: 26815.6 Da    PI: 10.0372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-0979128155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+r h ++Er RRd+ +++++ L +llP+      +K++K +i++ A + I +Lq
  XP_010558851.1  79 RCRRHMINERARRDKQRQSYFALHSLLPSG-----TKNDKNSIVQSALNRIGELQ 128
                     6788*************************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-667132No hitNo description
SuperFamilySSF474597.59E-1174142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.09378127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-779128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-882146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-684133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDPHLLSPDF LFPEEGSFWY EVFGERSRVP VQKQSAFRPY NKADGGGAVA AGNIKRRMAD  60
LLRRNWEERR KAAAPARDRC RRHMINERAR RDKQRQSYFA LHSLLPSGTK NDKNSIVQSA  120
LNRIGELQRQ KRELERRIHV LEANLKTASE EKQIALKVED PVSGTDSMLE ALKCLKAIGA  180
KSVTIQAKFS PREFSTTMTI ESQIAGGEVE QTLEKTLQEA EWKLLFLPEA SFCKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583ARDRCRRHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558851.11e-175PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-76BH092_ARATH; Transcription factor bHLH92
TrEMBLD7MXG41e-75D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGXP_010558851.11e-174(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]