PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558868.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 230aa MW: 25270.9 Da PI: 6.9759

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.8	6.8e-37	24	137	1	102
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssg. 88 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ +s+++ + ++++++++a++s + XP_010558868.1 24 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLNESqdlPSDPNYQIvdaKDDDNQQTAQFS--Ss 116 589**************************************************************66655555444543333333333333..23 PP TCP 89 ...........kaaksaakskksqk 102 + a+k+ ++++ XP_010558868.1 117 lvapmanldpeD----AMKTVFPTS 137 466666433321....223333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-33	25	135	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.172	27	85	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGLKSSGPGG GEIVQVQGGH IVRATGRKDR HSKVYTAKGP RDRRVRLSAH TAIQFYDVQD 60 RLGYDRPSKA VDWLIKKAKS AIDKLNESQD LPSDPNYQIV DAKDDDNQQT AQFSSSLVAP 120 MANLDPEDAM KTVFPTSRTD SNINFHSYPH DIISRTTNLN QDLGLSLHPS FLGNSDQAGS 180 SAADQALFAT FEPNNFQRMS GWNSESTSDQ RGFLVNPSHH QASVATMLNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-22	32	85	1	54	Putative transcription factor PCF6
5zkt_B	2e-22	32	85	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558868.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558868.1	1e-171	PREDICTED: transcription factor TCP10-like, partial
Swissprot	O82277	1e-70	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A1J3IRA7	9e-75	A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRING	XP_010558868.1	1e-170	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	8e-72	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]