PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558874.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 199aa MW: 20941.9 Da PI: 7.5631

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.5	7.2e-41	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++pe++r da++slvyeA+ r+rdPvyG++g i++lq+q+++l+ae++ XP_010558874.1 37 PCAACKLLRRRCAAECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLTEVPESQRGDAANSLVYEANLRLRDPVYGCMGAISALQHQIQSLHAEIS 131 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ XP_010558874.1 132 AVRSD 136 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-41	37	134	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MLGFPETGDH TVLSPGGVMG RRHVAAPPAT TLNTVTPCAA CKLLRRRCAA ECPFSPYFSP 60 HEPHKFAAVH KVFGASNVSK LLTEVPESQR GDAANSLVYE ANLRLRDPVY GCMGAISALQ 120 HQIQSLHAEI SAVRSDILRF KYSQAAAAAS PDALIAHTTD VGVGGHFRTA AATDPCSAAD 180 ATAVFAVSVG GDLLFLLLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	30	140	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	30	140	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558874.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558874.1	1e-144	PREDICTED: LOB domain-containing protein 13-like
Swissprot	Q9AT61	6e-78	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0D3C321	4e-77	A0A0D3C321_BRAOL; Uncharacterized protein
STRING	XP_010558874.1	1e-143	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-64	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]