PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558885.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 344aa    MW: 37530.1 Da    PI: 5.4582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081177199123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_010558885.1 177 YECKTCNRTFPSFQALGGHRASH 199
                     99**********99999998887 PP
2zf-C2H2130.0003250272123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_010558885.1 250 HECSICGSEFTSGQALGGHMRRH 272
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13176201IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-8176199No hitNo description
SMARTSM003550.052177199IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-8245272No hitNo description
PfamPF139121.1E-11249274IPR007087Zinc finger, C2H2
SMARTSM003550.019250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097250277IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVFDAFPNVG QPSYGEEEEP NSEAKRFYEI LNTSSTPIYE GCSEGLSRLS LSSQLMNMKT  60
DYNIPEKCID GFSQMFKQYL PEGEAHEAAE IVLAVCYGGD DYNSAVSSLA TATISSSSAA  120
AAAYCTEEEE DMAICLIMLA SGAAGPPPLR RKIEKSEKIH KIWSEKTQHE NSGLYVYECK  180
TCNRTFPSFQ ALGGHRASHK KPRTEVEKTK LPLPAPKTVA PEDVQNCRTK IPGLTLASPA  240
SNNNKPNKVH ECSICGSEFT SGQALGGHMR RHRSAMSARA AGEGGSNPRV GASPEDADDV  300
DRRIEPRKYL PLDLNLPAPE DDLRESKFQG LVFSATPALV DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558885.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558885.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-94ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLV4M4X41e-92V4M4X4_EUTSA; Uncharacterized protein
STRINGXP_010558885.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-86C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]