PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558909.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 290aa MW: 32582.3 Da PI: 8.6461

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.6e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien nrqvtfskRr+g+lKKA+EL vLCdaevavi+fs++gkl+e++s XP_010558909.1 9 KRIENANNRQVTFSKRRAGLLKKAHELAVLCDAEVAVIVFSNSGKLFEFAS 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.207	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-43	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.49E-41	2	69	No hit	No description
SuperFamily	SSF55455	4.45E-31	2	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-30	38	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF53474	8.12E-17	79	215	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	4.6E-19	84	220	IPR029058	Alpha/Beta hydrolase fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGRGKIEIKR IENANNRQVT FSKRRAGLLK KAHELAVLCD AEVAVIVFSN SGKLFEFASS 60 GYNNNVLTRD FCFTLFDDGF TLISLLDFRW QKISDPKSIA EILRQVYADH STDVDKVFSH 120 IVEITRHPAA AASLASIMCA PAGQLSFADA LSMCKKNKVP ICLMYGREDP WVKPIWGLRI 180 KWQIPNAPYY VISPAGHCPH DEVPEVVNYL LRGWIQHLES GGSSSLPHLE DEDSESSIAR 240 ELEFPRDGSK KSVNLRLYGS KYSLWRQVGS YLRSNLSLVL KKSAQDKSTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	3e-20	1	67	1	67	MEF2 CHIMERA
6bz1_B	3e-20	1	67	1	67	MEF2 CHIMERA
6bz1_C	3e-20	1	67	1	67	MEF2 CHIMERA
6bz1_D	3e-20	1	67	1	67	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Alpha/beta hydrolase dephytylating specifically the Mg-free chlorophyll pigment (pheophytin), yielding pheophorbide. No activity on chlorophyll. Belongs to the chlorophyll catabolic enzymes (CCEs). {ECO:0000269\|PubMed:19304936, ECO:0000269\|PubMed:20537045}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558909.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558906.1	1e-147	PREDICTED: pheophytinase, chloroplastic-like
Swissprot	Q9FFZ1	3e-95	PPH_ARATH; Pheophytinase, chloroplastic
TrEMBL	V4N6T2	2e-96	V4N6T2_EUTSA; Uncharacterized protein
STRING	XP_010558909.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	5e-31	AGAMOUS-like 15

Publications ? help Back to Top
Nikiforova VJ,Daub CO,Hesse H,Willmitzer L,Hoefgen R Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J. Exp. Bot., 2005. 56(417): p. 1887-96 [PMID:15911562] Schelbert S, et al. Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis. Plant Cell, 2009. 21(3): p. 767-85 [PMID:19304936] Sakuraba Y, et al. STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Plant Cell, 2012. 24(2): p. 507-18 [PMID:22366162] Sakuraba Y,Kim YS,Yoo SC,Hörtensteiner S,Paek NC 7-Hydroxymethyl chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence. Biochem. Biophys. Res. Commun., 2013. 430(1): p. 32-7 [PMID:23200839] Guyer L, et al. Different mechanisms are responsible for chlorophyll dephytylation during fruit ripening and leaf senescence in tomato. Plant Physiol., 2014. 166(1): p. 44-56 [PMID:25033826] Zhang W, et al. Chlorophyll degradation: the tocopherol biosynthesis-related phytol hydrolase in Arabidopsis seeds is still missing. Plant Physiol., 2014. 166(1): p. 70-9 [PMID:25059706] Zhang J, et al. Functional characterization and hormonal regulation of the PHEOPHYTINASE gene LpPPH controlling leaf senescence in perennial ryegrass. J. Exp. Bot., 2016. 67(3): p. 935-45 [PMID:26643195] Lin YP,Wu MC,Charng YY Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis. Plant Cell, 2016. 28(12): p. 2974-2990 [PMID:27920339] Chen J, et al. Suppressor of Overexpression of CO 1 Negatively Regulates Dark-Induced Leaf Degreening and Senescence by Directly Repressing Pheophytinase and Other Senescence-Associated Genes in Arabidopsis. Plant Physiol., 2017. 173(3): p. 1881-1891 [PMID:28096189] Guyer L,Salinger K,Krügel U,Hörtensteiner S Catalytic and structural properties of pheophytinase, the phytol esterase involved in chlorophyll breakdown. J. Exp. Bot., 2018. 69(4): p. 879-889 [PMID:29036670] He L, et al. A naturally occurring epiallele associates with leaf senescence and local climate adaptation in Arabidopsis accessions. Nat Commun, 2018. 9(1): p. 460 [PMID:29386641]