PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558917.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 421aa    MW: 46053.9 Da    PI: 9.8589
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77.1e-141555343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+ ++ kR+ g+ KK +EL +LCd+++++iifs +
  XP_010558917.1 15 IVNENARKASLKKRKLGLVKKVQELTILCDVKACLIIFSAD 55
                    679999*********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-18564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.54553IPR002100Transcription factor, MADS-box
CDDcd002665.13E-26689No hitNo description
SuperFamilySSF554557.59E-22697IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-7727IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131555IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-72742IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-74263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MRPATGKRKV KLAWIVNENA RKASLKKRKL GLVKKVQELT ILCDVKACLI IFSADEAAPL  60
VWPNPEVARG LLDRYFALPD IERSKKATNQ ESYLRDKTGK AQEQLLKSQK KNREAEMDHL  120
MFEINNGNKR LSDLSTNEVY SLISYSREKI GLLRKRGELI HQPPLRNVPG LPNQPANRDA  180
AAGGEGNGVG ANPMDDQNQY LMDQWIFHPA GSSTVALPLS VAPPTEQQTI TYQDDPTYIQ  240
MGISLQQPGS FLPAQGNGGS SSSTNPNLEM SLMSAQNSNV NFNGMSRLAN HPSYQRIMNM  300
NLNNNSDNPR GETSLVPMGL GLPSIGGHSR VQPMMMSHLR SFHSNFTGNE LGMMGAAARE  360
GSSSRAPFRS DLRLNHQRNR GESSSAGGAL RLQPPGEGSS SVPRDVDMDG PSGSNKDPPD  420
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1628KRKVKLAWIVNENARKASLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558917.10.0PREDICTED: agamous-like MADS-box protein AGL80
STRINGXP_010558917.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-42AGAMOUS-like 48