PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558970.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 25153.5 Da PI: 7.8021

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	81	137	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++k+ ++t+eql+ Le+ Fe++ +++ +++ +L+++lgL+ rqV vWFqN+Ra++++ XP_010558970.1 81 KKKKKKMTREQLRMLERSFEEEIKLDPDRKMKLSRELGLQPRQVAVWFQNKRARWRN 137 79999**************************************************95 PP
2	HD-ZIP_I/II	111.4	6e-36	82	173	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+++LE+sFeee kL+p+rK++l+reLglqprqvavWFqn+RAR+++kqlE+ ye+L + + +++e+e+L++ev +Lr+ l+ XP_010558970.1 82 KKKKKMTREQLRMLERSFEEEIKLDPDRKMKLSRELGLQPRQVAVWFQNKRARWRNKQLEHLYETLLHDFHVVSREKEMLQDEVVKLRSILR 173 59*************************************************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-21	57	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-21	64	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.479	78	138	IPR001356	Homeobox domain
SMART	SM00389	2.8E-18	80	142	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-16	81	137	IPR001356	Homeobox domain
CDD	cd00086	1.20E-14	88	139	No hit	No description
PRINTS	PR00031	4.4E-5	109	118	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.4E-5	118	134	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEWSNHFSSF VSSSSLDPFL YPFNLDHFQD QLKHEMAMAM AMEMAETQEA SLHLPLASDD 60 KFISCDNGSN SNSNSEDKKN KKKKKKMTRE QLRMLERSFE EEIKLDPDRK MKLSRELGLQ 120 PRQVAVWFQN KRARWRNKQL EHLYETLLHD FHVVSREKEM LQDEVVKLRS ILRQGGVSSK 180 QMWNAANGGE AIQIEYSNFG ITTASPTWPL PSSQNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	KKNKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558970.1	1e-161	PREDICTED: homeobox-leucine zipper protein ATHB-22
Swissprot	Q4PSR7	4e-51	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	D7LJ55	7e-52	D7LJ55_ARALL; Predicted protein
STRING	XP_010558970.1	1e-160	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	2e-42	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]