PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559050.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 245aa MW: 26796.2 Da PI: 8.0937

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.5	3.7e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg+++++++q++q XP_010559050.1 2 SCNGCRVLRKGCSENCVLRPCLqwiktADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWQICQQ 96 6*******************9998666789************************************************************* PP DUF260 91 kaelall 97 +++++l+ XP_010559050.1 97 AVDTVLR 103 9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.118	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-27	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCVLR PCLQWIKTAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WQICQQAVDT VLRGGSLRPI PELLTRAGGF 120 EGFPSQNSDE ASEICTEMLN LRQDSDGDRN NYHHCRFSSS RSRSTASPPK RKRLESEQPS 180 SGLDLSLIPN LPVACKEETR RPETSSMNSE ESVTTTTTSS FRGNTADERY GHGGGETAKL 240 LKLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559050.1	0.0	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-121	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	R0HL69	1e-131	R0HL69_9BRAS; Uncharacterized protein
STRING	XP_010559050.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-111	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]