PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559063.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 253aa    MW: 27092.6 Da    PI: 6.4141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003885106223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC+ Cgk+F++   L  H  +H
  XP_010559063.1  85 KCTVCGKTFPSYQALGGHKTSH 106
                     8**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6484106IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-885106No hitNo description
PfamPF139122.9E-1385108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-8140167No hitNo description
PfamPF139121.5E-11144169IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85145167IPR007087Zinc finger, C2H2
SMARTSM003550.44145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MALDTLNSPT SAAAAAAAPP LLRRRDDPEA EDLEPWTKRK RTKRQSLEHP DPTNNPPSEE  60
EYLALCLLML ARGSPPDTCP PPXLKCTVCG KTFPSYQALG GHKTSHRKPT CQTAPGTEDR  120
SNGNSNGISN SSNITVGGGQ SGRTHTCSIC FKTFPSGQAL GGHKRCHYDG SNVNVNVNGI  180
SNNGNGVDVV SGEVDGDERW SSEGDKEELT ASHRVFDLNL PADQYLEAAE KVFTGEDPLG  240
KSQLSGKEVR HGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12240RRRDDPEAEDLEPWTKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559063.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559063.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein AZF1-like
SwissprotQ9SSW13e-65AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A0D3E2G19e-65A0A0D3E2G1_BRAOL; Uncharacterized protein
STRINGXP_010559063.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-61zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]