PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559143.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27104.3 Da    PI: 4.6373
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-184192556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +f++eq++ Le +Fe +  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  XP_010559143.1 41 KRFSDEQIKSLELMFETETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 92
                    68*************************************************9 PP
2HD-ZIP_I/II121.54.2e-3939130293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +++r+s+eq+k+LE +Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlEk+y+ Lk++y++l+++ e+L+ke+++L++el++
  XP_010559143.1  39 NQKRFSDEQIKSLELMFETETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLEKEYNILKANYNNLASQCEALKKEKQALASELQR 130
                     689*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-181996IPR009057Homeodomain-like
SMARTSM003892.4E-153298IPR001356Homeobox domain
PROSITE profilePS5007116.9573494IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1840101IPR009057Homeodomain-like
CDDcd000866.65E-154095No hitNo description
PfamPF000462.0E-154192IPR001356Homeobox domain
PRINTSPR000316.9E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000316.9E-67490IPR000047Helix-turn-helix motif
PfamPF021838.1E-1694136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSERGEYSPP AAIPAMSAVP LSCISELAAM TVKKKKCNNQ KRFSDEQIKS LELMFETETR  60
LEPRKKVQLA RELGLQPRQV AIWFQNKRAR WKSKQLEKEY NILKANYNNL ASQCEALKKE  120
KQALASELQR LNELMQKSQE EVQCCGQGAA LSSTDHESDN GENARCEPEV KHENGPWALS  180
DDDNNIKAEY FGLDEDPDLM GIVEPADSCL TSSDDWGGFK SDALLDQSSS SYPWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559143.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559143.11e-177PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-100ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A178VMH62e-96A0A178VMH6_ARATH; HB-7
TrEMBLR0HUH22e-96R0HUH2_9BRAS; Uncharacterized protein
STRINGXP_010559143.11e-177(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-102homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]