PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559146.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 371aa MW: 42076.4 Da PI: 5.6556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	183	233	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i+ A++++k L XP_010559146.1 183 QRMTHIAVERNRRRQMNDYLNSLRFLMPPS---YIQRGDQASIVGGAIDFVKVL 233 79**************************...9**************9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.13E-9	181	231	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-11	181	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-15	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.786	182	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-10	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-9	188	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MESLQGHIDP CPLVGNLEVE GFAEEEDKVR QLATPSLQDT VPFLQMLQNG DPSPFLSFRE 60 PNFLAVLSLQ TLKKPWELES SFTHEVPDFH SSIRSETNSF YQNPTPISCM EEFNPAVSSQ 120 ELPFNALENL LSSANTVTSS PPPRTGNWRT KRKTSHLPPS MTREPRKRRR AKPTKNMEDT 180 ENQRMTHIAV ERNRRRQMND YLNSLRFLMP PSYIQRGDQA SIVGGAIDFV KVLEQLLQSL 240 ELQKRVQKSG EEEESRDANS GNKHLTGISP NELWTTNEDE ISTPKIEAAV IENHIKLRVE 300 CPKKRGQLLK AIASLEDLRL SVLHLNVASS HASVFYSFNL KMEDNCILGS ADEIETAVHQ 360 IFDQTDGRQL E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MESLQGHIDP CPLVGNLEVE GFAEEEDKVR QLATPSLQDT VPFLQMLQNG DPSPFLSFRE  60
PNFLAVLSLQ TLKKPWELES SFTHEVPDFH SSIRSETNSF YQNPTPISCM EEFNPAVSSQ  120
ELPFNALENL LSSANTVTSS PPPRTGNWRT KRKTSHLPPS MTREPRKRRR AKPTKNMEDT  180
ENQRMTHIAV ERNRRRQMND YLNSLRFLMP PSYIQRGDQA SIVGGAIDFV KVLEQLLQSL  240
ELQKRVQKSG EEEESRDANS GNKHLTGISP NELWTTNEDE ISTPKIEAAV IENHIKLRVE  300
CPKKRGQLLK AIASLEDLRL SVLHLNVASS HASVFYSFNL KMEDNCILGS ADEIETAVHQ  360
IFDQTDGRQL E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	169	KRKTSHLPPSMTREPRKRRR
2	165	169	RKRRR
3	165	172	RKRRRAKP
4	183	194	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559146.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559146.1	0.0	PREDICTED: transcription factor bHLH67-like isoform X1
Swissprot	Q700E4	1e-126	BH067_ARATH; Transcription factor bHLH67
TrEMBL	R0H7K9	1e-128	R0H7K9_9BRAS; Uncharacterized protein
STRING	XP_010559146.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-121	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]