PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559147.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 364aa    MW: 41424.7 Da    PI: 5.6773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12176226154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i+  A++++k L
  XP_010559147.1 176 QRMTHIAVERNRRRQMNDYLNSLRFLMPPS---YIQRGDQASIVGGAIDFVKVL 226
                     79****************************...9****************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15174245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-9174224No hitNo description
Gene3DG3DSA:4.10.280.101.9E-11174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.786175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIEWPLVGNL EVEGFAEEED KVRQLATPSL QDTVPFLQML QNGDPSPFLS FREPNFLAVL  60
SLQTLKKPWE LESSFTHEVP DFHSSIRSET NSFYQNPTPI SCMEEFNPAV SSQELPFNAL  120
ENLLSSANTV TSSPPPRTGN WRTKRKTSHL PPSMTREPRK RRRAKPTKNM EDTENQRMTH  180
IAVERNRRRQ MNDYLNSLRF LMPPSYIQRG DQASIVGGAI DFVKVLEQLL QSLELQKRVQ  240
KSGEEEESRD ANSGNKHLTG ISPNELWTTN EDEISTPKIE AAVIENHIKL RVECPKKRGQ  300
LLKAIASLED LRLSVLHLNV ASSHASVFYS FNLKMEDNCI LGSADEIETA VHQIFDQTDG  360
RQLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143162KRKTSHLPPSMTREPRKRRR
2158162RKRRR
3158165RKRRRAKP
4176187RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559147.10.0PREDICTED: transcription factor bHLH67-like isoform X2
SwissprotQ700E41e-120BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A1J3GYY11e-123A0A1J3GYY1_NOCCA; Transcription factor bHLH67
TrEMBLV4LJF41e-123V4LJF4_EUTSA; Uncharacterized protein
STRINGXP_010559146.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-116bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]