PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559148.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 363aa    MW: 41280.6 Da    PI: 6.2595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12175225154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i+  A++++k L
  XP_010559148.1 175 QRMTHIAVERNRRRQMNDYLNSLRFLMPPS---YIQRGDQASIVGGAIDFVKVL 225
                     79****************************...9****************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-11173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-9173223No hitNo description
SuperFamilySSF474592.88E-15173244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.786174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRKPLVGNLE VEGFAEEEDK VRQLATPSLQ DTVPFLQMLQ NGDPSPFLSF REPNFLAVLS  60
LQTLKKPWEL ESSFTHEVPD FHSSIRSETN SFYQNPTPIS CMEEFNPAVS SQELPFNALE  120
NLLSSANTVT SSPPPRTGNW RTKRKTSHLP PSMTREPRKR RRAKPTKNME DTENQRMTHI  180
AVERNRRRQM NDYLNSLRFL MPPSYIQRGD QASIVGGAID FVKVLEQLLQ SLELQKRVQK  240
SGEEEESRDA NSGNKHLTGI SPNELWTTNE DEISTPKIEA AVIENHIKLR VECPKKRGQL  300
LKAIASLEDL RLSVLHLNVA SSHASVFYSF NLKMEDNCIL GSADEIETAV HQIFDQTDGR  360
QLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142161KRKTSHLPPSMTREPRKRRR
2157161RKRRR
3157164RKRRRAKP
4175186RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559148.10.0PREDICTED: transcription factor bHLH67-like isoform X3
SwissprotQ700E41e-122BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A1J3GYY11e-124A0A1J3GYY1_NOCCA; Transcription factor bHLH67
TrEMBLR0H7K91e-123R0H7K9_9BRAS; Uncharacterized protein
STRINGXP_010559146.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]