PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559169.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 971aa    MW: 108018 Da    PI: 6.2465
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95e-42152229178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C adls++k+yhrrhkvCe+hska+++lv g +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_010559169.1 152 VCQVENCGADLSKVKDYHRRHKVCEMHSKASSALVGGFMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 229
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33147214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.539150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-39151231IPR004333Transcription factor, SBP-box
PfamPF031102.1E-30153226IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.0E-7747853IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.98E-8747850IPR020683Ankyrin repeat-containing domain
CDDcd002042.90E-9749850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MEDRTEGDAH RFYGVSAMDL RAVGERNVEW DSSDWKWDGD LFVARQLNPG SSETMGRQFF  60
PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRELDKKRR AVVIEDNNLR DDAGSLTLKL  120
CGHGYPAGDR ESLDINGAKK TKTGGSVPSR AVCQVENCGA DLSKVKDYHR RHKVCEMHSK  180
ASSALVGGFM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNVNPLGD  240
DQTSSYLLIS LLKVLSNMRS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN IAGLLQGRVQ  300
SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQDLYVDG TRGAEGMNCS PKRVRMNDFD  360
LNDIYIDSDD GTEDVERSPP VNPTTSSLDY PLWIRQESHQ SSPPQTSRNS DSASDHSPSS  420
SSIDAQGRTD RIVFKLFGKE PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ  480
AEGAWEELCS DLGFSLRRLL DLSDDPFWTD GWIYVRVQNQ IAFALNGQIV VDTSLPLRSR  540
NYSQIFCVRP IAVAATGRVQ FTVRGTNLRK PGTRLLCAVE GKYLVQEATV ESMVGNDALE  600
EESNEVECIA FSCDMPAASG RGFMEVEDNG LSCSFFPFIV VEDDVCSEIR MLESTLEFTG  660
TDSAKQAMDF IHEIGWLLHR SKLNSRLGQE SKPNGNLFPL RRFKWLIEFS MDHEWCAVIR  720
KLLTILFDGT VGSELGPSSD SALSELCLLH RAVRKNSRPM VDMLLRYDPK EQKLLGNEIR  780
MFRPDATGPA GLTPLHIAAG KDGSEDVLDA LTEDPGMVGL EAWKNSRDST GFTPEDYARL  840
RGHFSYIHLI QRKLKKKSTT EEHAVVVDIP LSFPDTAMEK SHQKQKTGLR PSGLEITLAN  900
QAKSSHCKLC DQKMAYGFGP AVRSVAYRPA MLSMVAIAAV CVCVALLFKS CPEVLYVFQP  960
FRWELLAYGS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-321522261084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559169.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1J3IQZ60.0A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRINGXP_010559169.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]