PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559170.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 971aa MW: 108011 Da PI: 6.352

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.8e-42	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_010559170.1 152 VCQVENCGADLSRVKDYHRRHKVCEMHSKASSALVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.4E-34	147	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.599	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-39	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-30	153	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.46E-8	747	850	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.2E-7	748	852	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.08E-9	749	850	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF 60 PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL 120 CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK 180 ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD 240 DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN IDGLLQGRVQ 300 SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD 360 LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTLQAE PQQKQILKHV 420 QSNDGRGRTD RIVFKLFGKE PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ 480 AEGAWEELCS DLGFSLRRLL DLSDDPFWTD GLIYVRVQNQ IAFALNGQVV VDTSLPLRSR 540 NCSQIFCVRP IAVAATGRIQ FTVRGTNLRK PGTRLLCAVE GKYLVQEATL ESMDGNDDLE 600 EENNEVECIE FSCDMPAASG RGFMEVEDNG LSCSFFPFIV VEDDVCSEIR MLESTLEFTG 660 TDSAKQAMDF IHEIGWLLHR SKLNSRLGQE SKPNGNLFPL RRFKWLIEFS MDHDWCAVIK 720 KLLTILFDGT VGSEQGPSSD SALSELCLLH RAVRKNSRPM VEMLLRYGPK EQNLLGNEIR 780 LFRPDATGPA GLTPIHIAAG KDGSEDVLDA LTEDPGMVGL EAWKNSRDST GFTPEDYARL 840 RGHFSYIHLI QRKLKKKSTT EEHAVVVDIP LSFPDTAIEK SHQKQKTGLR PSGLEIALAN 900 QAKSSHCKLC DQKMAYGFGP AVRSVAYRPA MLSMVAIAAV CVCVALLFKS CPEVLYVFQP 960 FRWELLAYGT S

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF  60
PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL  120
CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK  180
ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD  240
DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN IDGLLQGRVQ  300
SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD  360
LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTLQAE PQQKQILKHV  420
QSNDGRGRTD RIVFKLFGKE PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ  480
AEGAWEELCS DLGFSLRRLL DLSDDPFWTD GLIYVRVQNQ IAFALNGQVV VDTSLPLRSR  540
NCSQIFCVRP IAVAATGRIQ FTVRGTNLRK PGTRLLCAVE GKYLVQEATL ESMDGNDDLE  600
EENNEVECIE FSCDMPAASG RGFMEVEDNG LSCSFFPFIV VEDDVCSEIR MLESTLEFTG  660
TDSAKQAMDF IHEIGWLLHR SKLNSRLGQE SKPNGNLFPL RRFKWLIEFS MDHDWCAVIK  720
KLLTILFDGT VGSEQGPSSD SALSELCLLH RAVRKNSRPM VEMLLRYGPK EQNLLGNEIR  780
LFRPDATGPA GLTPIHIAAG KDGSEDVLDA LTEDPGMVGL EAWKNSRDST GFTPEDYARL  840
RGHFSYIHLI QRKLKKKSTT EEHAVVVDIP LSFPDTAIEK SHQKQKTGLR PSGLEIALAN  900
QAKSSHCKLC DQKMAYGFGP AVRSVAYRPA MLSMVAIAAV CVCVALLFKS CPEVLYVFQP  960
FRWELLAYGT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-32	152	226	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559170.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1J3IQZ6	0.0	A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRING	XP_010559171.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]