PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559178.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 289aa MW: 32250 Da PI: 6.7948

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.9	2e-33	161	218	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers +d+++v++tYeg+H h+ XP_010559178.1 161 EDGYRWRKYGQKAVKNSPFPRSYYRCTTATCDVKKRVERSFTDTSIVVTTYEGQHSHP 218 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-34	145	220	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	152	220	IPR003657	WRKY domain
PROSITE profile	PS50811	31.376	155	220	IPR003657	WRKY domain
SMART	SM00774	3.1E-38	160	219	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	161	218	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSSTFCFDAF SHLGLIDLWG RERKMENTGV GTPSKSVWDL GELAERNSLG FMELLGVHHD 60 LDPSSLFDTS PPSPTQAASK LEPSCWDAVA TPNSSSISST SSDAVNEGKV KGEDDEEEEE 120 GEEQQEKRAT KKQLKPKKIN QKRKREPRVA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP 180 RSYYRCTTAT CDVKKRVERS FTDTSIVVTT YEGQHSHPSP LMPRPSFSGG LFSSGRSFVL 240 PIQNSSILSS DVLNGYDHVK KSRDDAGLMV KDHGLLQDLV ASHMLKDNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-27	150	220	7	77	Probable WRKY transcription factor 4
2lex_A	5e-27	150	220	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559178.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559178.1	0.0	PREDICTED: probable WRKY transcription factor 23
Swissprot	O22900	1e-76	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A061DT91	4e-82	A0A061DT91_THECC; WRKY DNA-binding protein 23, putative
STRING	XP_010559178.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6152	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-62	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]