PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559216.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 894aa MW: 99408.9 Da PI: 6.3506

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.5	3.5e-42	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_010559216.1 152 VCQVENCGADLSRVKDYHRRHKVCEMHSKASSALVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.9E-34	147	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.599	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-39	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-30	153	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.54E-8	672	775	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.0E-7	672	781	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.19E-9	674	775	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF 60 PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL 120 CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK 180 ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD 240 DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN SAGLLQGRVQ 300 SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD 360 LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTSRNS DSASDHSPSS 420 SSIDAQGRTD RIVFKLFGKE PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ 480 AEGAWEELCS DLGFSLRRLL DLSDDPFWTD GWIYVRVQNQ IAFALNGQVV VDTSLPLRSN 540 IISNELIDIQ VEDNGLSCSF FPFIVVEDDV CSEIRMLEST LEFTGTDSAK QAMDFIHEIG 600 WLLHRSKLNS RLGQESKPNG NLFPLRRFKW LIEFSMDHEW CAVIRKLLTI LFDGTVGSEQ 660 GPSSDSALSE LCLLHRAVRK NSRPMVEMLL RYDPKEQKLL GNEIRLFRPD ATGPAGLTPL 720 HIAAGKDGSE DVLDALTEDP GMVGLEAWKN SRDSTGFTPE DYARLRGHFS YIHLIQRKHK 780 KKSTTEEHAV VVDIPLSFPD TAMENSLQKQ KTGSRPSGLS EISRPTSSHC KLCDQKMAYG 840 FGPAVRSVAY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV FQPFRWELLA YGSS

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MEDRVEGEAH RFYGVSAMDL RAVGKRIAEW DSNDWKWDGD LFVARQLNPG SSETMGRQFF  60
PLCSAIPTTG NSSNSSSTWS DEGNIEMMER GTRGLDKKRR AVVIEDNNLR DDAGSLTLKL  120
CGHGYPAGDR ETLDINGAKA TKAGGSVPSR AVCQVENCGA DLSRVKDYHR RHKVCEMHSK  180
ASSALVGGIM QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTNPD TGGNGNPLGD  240
DQTSSYLLIN LLKVLSNMHS NGSDHAGDQD LLSHLLKSLV SHAGEQIGKN SAGLLQGRVQ  300
SSLNVGNSHL LSNGQSPQED LKPLSVNESE MPRQEVYVDV TRGAEGVNCS PKRVRVNDFD  360
LNDIYIDSDD GTVDVERSPP MNPTTSSLDY PSWIRQESHQ SSPPQTSRNS DSASDHSPSS  420
SSIDAQGRTD RIVFKLFGKE PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ  480
AEGAWEELCS DLGFSLRRLL DLSDDPFWTD GWIYVRVQNQ IAFALNGQVV VDTSLPLRSN  540
IISNELIDIQ VEDNGLSCSF FPFIVVEDDV CSEIRMLEST LEFTGTDSAK QAMDFIHEIG  600
WLLHRSKLNS RLGQESKPNG NLFPLRRFKW LIEFSMDHEW CAVIRKLLTI LFDGTVGSEQ  660
GPSSDSALSE LCLLHRAVRK NSRPMVEMLL RYDPKEQKLL GNEIRLFRPD ATGPAGLTPL  720
HIAAGKDGSE DVLDALTEDP GMVGLEAWKN SRDSTGFTPE DYARLRGHFS YIHLIQRKHK  780
KKSTTEEHAV VVDIPLSFPD TAMENSLQKQ KTGSRPSGLS EISRPTSSHC KLCDQKMAYG  840
FGPAVRSVAY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV FQPFRWELLA YGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-32	152	226	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559216.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559216.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A061DRH1	0.0	A0A061DRH1_THECC; Squamosa promoter-binding protein, putative isoform 1
STRING	XP_010559216.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]