PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559252.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22329.8 Da    PI: 10.4771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.28.1e-221257449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++   rqvtfskRrng++KKA ELS+LC+++vav++fs+ g+ y y
  XP_010559252.1 12 KDGNTRQVTFSKRRNGVFKKADELSTLCGVDVAVMVFSPGGRPYSY 57
                    67778************************************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.693161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-27272IPR002100Transcription factor, MADS-box
CDDcd002651.05E-30276No hitNo description
PRINTSPR004043.3E-18323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRRKIPMEM VKDGNTRQVT FSKRRNGVFK KADELSTLCG VDVAVMVFSP GGRPYSYGSP  60
SVDAVFDRYL GPDTSSNPRV RVNVNANGRK ATKRVAAKQV KLENSQAYLT SLEEELQAEK  120
LRGEVLRDKF KETREKNKFK DVKDLGMDEL NEFKGKLEAL REMINGKIME MEASSTLMML  180
SKGKSPIEVE GSKNKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559252.11e-142PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010559252.11e-141(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-46AGAMOUS-like 29