PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559298.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 296aa    MW: 32835 Da    PI: 7.5876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.42e-1679130155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   +++K + a+i+  A+++Ik+L+
  XP_010559298.1  79 QRMTHIAVERNRRRQMNQHLSDLRSLMPQS---YAQKGDQASIVGGAIDFIKELE 130
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1877152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-1477134No hitNo description
PROSITE profilePS5088816.1278129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1679145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-1479130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1184135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTLEALSSND LFSFLLYETL SPTPFSAAAV PNSPENDVIV RKTTTSGARQ EPPPASRGIR  60
KRRRRKPRGC KNEEEAETQR MTHIAVERNR RRQMNQHLSD LRSLMPQSYA QKGDQASIVG  120
GAIDFIKELE HKLQSLEAQK LQLYQSNRGF PSSSSTSQDS GEAENHTQSL SQFFLHSYDP  180
SQENKNGSRS FVRAAMADVE VTLIETHANI RILCRRRGTM LSKLVAALHS LSLSVLHLSL  240
TTTLTCAVYS ISTKVEESCQ LSSGDDIAAA VHHMLSIIEE EAFCCSSMSG MPFDIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRRR
25965RKRRRRK
35966RKRRRRKP
46065KRRRRK
56167RRRRKPR
67990RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559298.10.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR01e-119BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A087GNJ21e-125A0A087GNJ2_ARAAL; Uncharacterized protein
STRINGXP_010559298.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-118beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]