PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904556.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 601aa MW: 64047.1 Da PI: 9.1087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904556.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_010904556.1 75 FICEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	11.8	0.00073	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_010904556.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.7E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.84E-7	74	97	No hit	No description
Pfam	PF12171	3.0E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	75	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	75	97	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.5E-4	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.84E-7	146	171	No hit	No description
SMART	SM00355	150	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MASASSTEPF FGIREEDHRN QMKQQQPASM PTSSSAAAPQ TAAPVKKKRN LPGNPNPDAE 60 VIALSPKALL ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLRQKSTKE VRRRVYVCPE 120 TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARIP TGLSTIGSHL YGNSSMALGL SQVNSQITSS 240 LQVQSHQSSN NILRLGGGSG SGSHFEHLIS SSNPSPFRPP QPLPSSAFFL GGASNQDFNE 300 ETQSHHSLLQ NKPFHGLMQL PDLQSRATAS SSTAAAANLF NLGFFSNSSS TSSISTSNIT 360 SNQNNHLLIS DPFSSGNGST ESTTLFSGNF MSDHMAAGMS PLLNTSMRNE SSLPQMSATA 420 LLQKAAQMGS TTSGGSSLLQ GFSSASPSGS RSTSFQAIFN GGSNGSGDAL RFQMENETRL 480 QDLMNSLANG NAGLFGGSGG VAAFAGSCTT GGHEQQAGGI GGFNSGLCNM DEAKFQHNIS 540 PGNLGGSDGL TRDFLGVGNM VRSMGGGLSQ RGRHHGIDIS SMDHEMKSAT SSQSFDGGTL 600 Q

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MASASSTEPF FGIREEDHRN QMKQQQPASM PTSSSAAAPQ TAAPVKKKRN LPGNPNPDAE  60
VIALSPKALL ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLRQKSTKE VRRRVYVCPE  120
TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARIP TGLSTIGSHL YGNSSMALGL SQVNSQITSS  240
LQVQSHQSSN NILRLGGGSG SGSHFEHLIS SSNPSPFRPP QPLPSSAFFL GGASNQDFNE  300
ETQSHHSLLQ NKPFHGLMQL PDLQSRATAS SSTAAAANLF NLGFFSNSSS TSSISTSNIT  360
SNQNNHLLIS DPFSSGNGST ESTTLFSGNF MSDHMAAGMS PLLNTSMRNE SSLPQMSATA  420
LLQKAAQMGS TTSGGSSLLQ GFSSASPSGS RSTSFQAIFN GGSNGSGDAL RFQMENETRL  480
QDLMNSLANG NAGLFGGSGG VAAFAGSCTT GGHEQQAGGI GGFNSGLCNM DEAKFQHNIS  540
PGNLGGSDGL TRDFLGVGNM VRSMGGGLSQ RGRHHGIDIS SMDHEMKSAT SSQSFDGGTL  600
Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	147	211	3	67	Zinc finger protein JACKDAW
5b3h_F	7e-34	147	211	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904556.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_010904558.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_010904560.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_029116694.1	0.0	protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3	1e-131	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2H3ZAW8	0.0	A0A2H3ZAW8_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_008811073.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-101	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]