PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904647.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 173aa    MW: 18321.3 Da    PI: 8.5511
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904647.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.91.4e-12731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr +L YPrGA++++Ca+C+t+
  XP_010904647.1  7 CNGCRSVLLYPRGATNICCAVCNTI 31
                    ***********************97 PP
2zf-LSD147.43.1e-154670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y rGA+sVRC++C+t+
  XP_010904647.1 46 CGGCRTLLMYSRGATSVRCSCCNTI 70
                    ***********************97 PP
3zf-LSD146.18e-1584108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C +Crt+L+YP GApsV+Ca+C+ V
  XP_010904647.1  84 CDQCRTTLMYPNGAPSVKCAICHYV 108
                     **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.0E-12434IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.2E-174372IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.7E-1381110IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSQLVCNGC RSVLLYPRGA TNICCAVCNT ITSVPPPAME MSQLVCGGCR TLLMYSRGAT  60
SVRCSCCNTI NLARSANQVA HVNCDQCRTT LMYPNGAPSV KCAICHYVTN IGASNMRVPM  120
PAARRPNEFT AMPPSNSAPT SQAQTVVVEN PMTVDESGKL VSNVVVGVTT GKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904647.11e-123protein LOL3 isoform X1
SwissprotQ6ASS21e-75LOL3_ORYSJ; Protein LOL3
TrEMBLA0A2H3WZG81e-110A0A2H3WZG8_PHODC; protein LOL2-like
STRINGXP_008776040.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-66LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]