PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904694.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 280aa MW: 30809.4 Da PI: 6.9643

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904694.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+g+t++hvkSHLQkYRl XP_010904694.1 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.423	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-24	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MYHAKKVSTV SMVPHKAQGT EQLANAGVMG GSNVSNPTNS GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGITIYHV KSHLQKYRLA KYLPESPADG SKDEKKDSAD 120 TLSSMDSASG MQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLQK IIDEQQKLTG 180 ALKASEEKQN PSESPSTSQD CIGDPSSPLK KQKISDQSPD ATHEMPVSES KPDFIGQWDR 240 ELYERSVAGF SFDLGSEFKE GGNNCELQEH QLAGATANRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904694.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	2e-76	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H3XTD4	1e-172	A0A2H3XTD4_PHODC; myb family transcription factor PHL7-like isoform X1
STRING	XP_008788479.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-63	G2-like family protein