PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904916.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 251aa    MW: 27435.1 Da    PI: 8.898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904916.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-3137128191
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                     aCaaCk++r+kC+ +C la yfpae++++f  vhk+FG sn++k+lka++    re a+++l++eAe+r  dP  G+++ +++l+++ + l+
  XP_010904916.1  37 ACAACKHQRKKCTGNCELASYFPAERTREFGLVHKVFGISNLTKMLKAIDSIPdRELAVETLTWEAEWRNIDPSVGCYNEVMRLKHENAVLR 128
                     7************************************************77655******************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1136138IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2937128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQRNISHPPQ PLPPPPGPAP APVAGAGAGA GHGGHQACAA CKHQRKKCTG NCELASYFPA  60
ERTREFGLVH KVFGISNLTK MLKAIDSIPD RELAVETLTW EAEWRNIDPS VGCYNEVMRL  120
KHENAVLRDV IRRCGNCSRL RLPPPYHPPL PPPKRHPANG DHHNNGGGNL MHDNEGINNN  180
NGNIENLINN GAVVAMVPQQ MINHPVNHGN LINGNRDHLS PMYMPPLENG NGGQRNIGHG  240
ALYLPNHIRR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1733123796LOB family transfactor Ramosa2.1
5ly0_B3e-1733123796LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904916.10.0LOB domain-containing protein 2-like
TrEMBLA0A2H3ZU241e-85A0A2H3ZU24_PHODC; LOB domain-containing protein 12-like
STRINGXP_008784488.11e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-24LOB domain-containing protein 2