PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904958.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 251aa MW: 27764.4 Da PI: 8.6081

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904958.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.3e-32	123	180	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk ++rs+edp+vv++tYeg+H h+ XP_010904958.1 123 EDGYQWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKLIQRSSEDPTVVITTYEGQHCHH 180 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-33	108	181	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-28	114	180	IPR003657	WRKY domain
PROSITE profile	PS50811	29.115	117	182	IPR003657	WRKY domain
SMART	SM00774	3.6E-37	122	181	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	123	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEEQSRDPVA TWTFSGDRGF IYCTERDDSI LGDVAPEVGS GFLTFDLGDA SGLDMVAPPP 60 EKRSPPPPPV PPPKSGAGSG GTALSSSTGD PPETTNKVIR KRQKRAHQPR FAFMTKSEID 120 LLEDGYQWRK YGQKAVKNSP FPRSYYRCTN SKCTVKKLIQ RSSEDPTVVI TTYEGQHCHH 180 SVAFPRGGMR ARHAAALMDQ LVPSLRFPAM PLHGNQPMVP GQLVQFPHKE HYNEGLLDDI 240 MLSTVRKTQG E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	112	179	7	74	Probable WRKY transcription factor 4
2lex_A	1e-25	112	179	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904958.1	0.0	probable WRKY transcription factor 51
TrEMBL	A0A2H3X1Q9	7e-64	A0A2H3X1Q9_PHODC; probable WRKY transcription factor 57 isoform X2
STRING	XP_008776993.1	5e-63	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-54	WRKY DNA-binding protein 57