PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904961.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 495aa    MW: 55010.3 Da    PI: 7.9833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904961.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001584102321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C +Cgk F++  +L  H+r
  XP_010904961.1  84 CRKCGKGFPSLKSLFGHMR 102
                     ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-7931No hitNo description
PROSITE profilePS5015710.346936IPR007087Zinc finger, C2H2
SMARTSM003550.5931IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-6933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801031IPR007087Zinc finger, C2H2
SuperFamilySSF576674.31E-777104No hitNo description
SMARTSM003550.2282104IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.78582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PfamPF139124.7E-784106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-7329352No hitNo description
PfamPF139128.4E-12329354IPR007087Zinc finger, C2H2
SMARTSM003550.061330352IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868330357IPR007087Zinc finger, C2H2
PROSITE patternPS000280332352IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-7399426No hitNo description
SMARTSM003550.42404426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787404426IPR007087Zinc finger, C2H2
PfamPF139121.1E-9404426IPR007087Zinc finger, C2H2
PROSITE patternPS000280406426IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MERDQELKHC CRVCGKSFPC GRSLGGHMRS HLASNSCAEV EARLQSSRSS IGVGAGYDLR  60
ENPKKTWRLS GSGSDGSPGH DKLCRKCGKG FPSLKSLFGH MRCHPDKSHH NLEEGEEEEK  120
ELEEQEGAWS AGGQSDNEVM IPRRRRRSRR VALIPASSTQ VLELEKEQED VALSLMMLSR  180
DTGFWSSISS TAESDKNSVV LKNLDSEGDE IGKGKKRSEF ISLRYGDRRD GLKKVESDVS  240
DDDGFVKDDE FKKPKAYTSD TDEFEHADEA SRKGSLKKKD LSCCLAELGR KTRFDQWHSG  300
TGKYSKSGSR SEFGASKADF SKVSIKRGRY ECTTCNKFFP SYQALGGHRA SHKRIKVLLV  360
SRTEGSNNSL ETEASIKPAQ LEELVDKNVG IDTSSEASKK VKDHECPICH NLFSSSQALG  420
GHKKSHLVVS SDGADLTHQT IVIQQQPPGM PDVLDLNLPA PTDEGYNNTE GNLKFRSWWV  480
GRNHRREPLW GLISN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149RRRRRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904961.10.0zinc finger protein ZAT9-like
TrEMBLA0A3Q0ICF10.0A0A3Q0ICF1_PHODC; zinc finger protein ZAT1-like
STRINGXP_008805104.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-28C2H2-like zinc finger protein