PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904998.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 286aa MW: 30958.9 Da PI: 5.3515

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904998.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.1	3e-22	153	254	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ +++ +l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +g v F + ++ XP_010904998.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyMQQRPSP-ELIAKDLHGVEWRFRHIYRGQPCRHLLTTGWSAFVNKKKLVSGAAVPFL--RGND 244 99***************************85555555.9********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_010904998.1 245 GELRLGIRRA 254 999**996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.19E-38	149	263	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-36	150	262	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.17E-19	151	253	No hit	No description
SMART	SM01019	4.8E-19	153	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-20	153	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.632	153	255	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGIDLNTVEE EEEEEAELPA AVQVPSQAQH RPSPATAGAE TLCLELWHAC VGSLTSLRRK 60 GSVVVYLPQG HLEHLGDAGG SGGSSYDLPP HVFCCVIDVK LHADVATDEV YAQLSLVAES 120 EAVERQLQEG EVEGDGEVED VDGLHRCLMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP 180 PLDYMQQRPS PELIAKDLHG VEWRFRHIYR GQPCRHLLTT GWSAFVNKKK LVSGAAVPFL 240 RGNDGELRLG IRRAAQLKNG TPFSAPCSQS LDLGKLAAVA NAVSTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	4e-78	34	285	11	256	Auxin response factor 1
4ldw_A	4e-78	34	285	11	256	Auxin response factor 1
4ldw_B	4e-78	34	285	11	256	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029116807.1	0.0	LOW QUALITY PROTEIN: auxin response factor 15-like
Swissprot	Q0JKI9	1e-115	ARFB_ORYSJ; Auxin response factor 2
TrEMBL	A0A2H3YG18	1e-169	A0A2H3YG18_PHODC; Auxin response factor
STRING	XP_008798266.1	1e-169	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2537	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-108	ARF family protein

Publications ? help Back to Top
Khanday I,Yadav SR,Vijayraghavan U Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways. Plant Physiol., 2013. 161(4): p. 1970-83 [PMID:23449645]