PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905004.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 212aa MW: 23472.5 Da PI: 9.4117

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905004.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.2	8.5e-66	33	186	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 + + ++e+vCyv+CnfCntilavsvP + l+++vtvrCGhCt+llsvn + q++a ++ ++++ +++e ++ +++ ++++s XP_010905004.1 33 SAQITTEHVCYVHCNFCNTILAVSVPGNNLLNIVTVRCGHCTNLLSVNTSGLLQTVALQDL--------QAHNVGSQEYRMECGSSSK-CNRASL 118 567899****************************************9999998888774........3445555544444433322.223322 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ n+++++p p i+PP+krqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+i fgl XP_010905004.1 119 MH-SML-NDQQQTP---P-IHPPQKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHINFGL 186 22.233.3344443...4.99*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-70	37	186	IPR006780	YABBY protein
SuperFamily	SSF47095	2.88E-8	127	179	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.9E-5	135	180	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MKSSSQLKSA IASSSSLAHV HGTLFGTRDR KMSAQITTEH VCYVHCNFCN TILAVSVPGN 60 NLLNIVTVRC GHCTNLLSVN TSGLLQTVAL QDLQAHNVGS QEYRMECGSS SKCNRASLMH 120 SMLNDQQQTP PIHPPQKRQR VPSAYNRFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP 180 HINFGLNLNG NKQVNLDDTI DAPGGQKSQR FH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029116808.1	1e-149	protein YABBY 2
Swissprot	Q10FZ7	3e-76	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3X4B6	1e-117	A0A2H3X4B6_PHODC; protein YABBY 2-like
STRING	XP_008778120.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-69	YABBY family protein