PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905085.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24003.2 Da PI: 9.1964

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905085.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	49	103	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++++q++ Le F k+r++ ++ +LA +lgL+ +qV vWFqNrRa++k+ XP_010905085.1 49 KKRRLSDQQVKFLEMSFGKERKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKN 103 56689************************************************95 PP
2	HD-ZIP_I/II	118.6	3.4e-38	49	140	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE+sF +e+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k+lE++y +Lk+a+da++ e+++Le+ev +L+e+l+e XP_010905085.1 49 KKRRLSDQQVKFLEMSFGKERKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKNKHLEEEYLKLKSAHDAVVVEKCHLENEVLKLKEKLTE 140 9***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.066	44	104	IPR001356	Homeobox domain
SMART	SM00389	3.6E-16	47	108	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.88E-16	48	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-17	49	103	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-15	49	103	IPR001356	Homeobox domain
CDD	cd00086	1.18E-14	49	105	No hit	No description
PRINTS	PR00031	3.1E-5	75	84	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	79	102	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.1E-5	84	100	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MIKTIPSHLE EERSSLMSFG LYSQKIEGET RTRRRRRKTK VDGAGGEAKK RRLSDQQVKF 60 LEMSFGKERK LESGRKVHLA GELGLDPKQV AVWFQNRRAR YKNKHLEEEY LKLKSAHDAV 120 VVEKCHLENE VLKLKEKLTE AEVSIRKLSE AVNGASGGSG GDGGGSPTSS FSTVTYHPLV 180 GEFGVNGEAD LIYIPEYNFN NYMMEWDDLY GM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	51	RRRRKTKVDGAGGEAKKRR
2	34	39	RRRKTK
3	35	51	RRKTKVDGAGGEAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905085.1	1e-155	homeobox-leucine zipper protein HOX12
Swissprot	Q7XI85	8e-58	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A2H3Y9T6	4e-96	A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like
STRING	XP_008795628.1	7e-97	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-37	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]