PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905089.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 906aa    MW: 99514.7 Da    PI: 8.2454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905089.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19391491199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010905089.1 391 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 483
                     89**************************666667778***************9989999999***9.********************987.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  XP_010905089.1 484 LVMGFRKA 491
                     88777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-30387492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-20388490IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-22389490No hitNo description
SMARTSM010194.6E-22391492IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406391492IPR003340B3 DNA binding domain
PfamPF023623.0E-16391490IPR003340B3 DNA binding domain
PROSITE profilePS5105013.434647697IPR011124Zinc finger, CW-type
PfamPF074962.6E-10652694IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MSSSSSAPAP APKICFNSHC KEPKSEGPRR KGWRLRSGEF ADLCDRCFSA YDQGSFCETF  60
HSDAAGWRSC ETCGKRLHCG CIVSVSAFVL LDAGGIECFA CARKSVVMPQ APNQMWPSPL  120
VKPPQISERK DFAIKSWKQM TGPFPGQWRQ ASHIWNASSL QSDLHQRLSY EFDRPTNTER  180
MISGGRNSIT AQEKKFEDLP EKLGSSSLNH VARDRYANGN TCLDPVSAFN IYQREEGSAD  240
GLQDRGHLVG ENDPLSTRKA GISDPCSTSA AVNLENNPNS SVNSLPSSIL KEDPSSLLIG  300
LAAQFPSSNG AKDPSRVSTT HPQRQAGPPL SKQFCPHNGI DGELQAQMRN GRPRVDPRAR  360
TQLLPRYWPR ITDQELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPAI  420
SQPEGLPLKV QDASGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRIDP  480
EGKLVMGFRK ASSVSAEQDT QTGKAGNGFS TSTDGHNKNS ATDLNANLPL RPLKGNTESR  540
NSINTADQAT WSKFDRSGFI QKDGPTARSS QGPTKRKGSN LGSKSKRLRM ENEDSMELKV  600
TWEEAQELLR PPPNHVPTIV VIEGIEIEEY EEAPVLGKRT YFTSNQSGDN YQWAQCEDCS  660
KWRKLPVDAT LPFGWTCSDN KWDPERSSCS SAQELSLEQL ANLIPIKTGA SKRSKVKVEA  720
DNIEVSDGLD TLANLAILGE GGALPTSSQP TTKHPRHRPG CTCIVCIQPP SGKGPKHKQT  780
CTCNVCLTVK RRFRTLMLRR EKRQSEREAE AARKQQQQQQ QQLIQSPEML PPLGNDPSSA  840
GPSVSSSPQK AVVNNDGAEE GSECKKTSPS PLKAQIDLNI QPEREEEPSP KADAGGMMKL  900
LRDAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-643694982131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1789802KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905089.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2H3Z1B30.0A0A2H3Z1B3_PHODC; B3 domain-containing protein Os07g0563300-like
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-152HSI2-like 1