PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905097.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 799aa    MW: 87970.5 Da    PI: 8.334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905097.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19284384199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010905097.1 284 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 376
                     89**************************666667778***************9989999999***9.********************987.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  XP_010905097.1 377 LVMGFRKA 384
                     88777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-30280385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-20281383IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-23282383No hitNo description
PROSITE profilePS5086311.406284385IPR003340B3 DNA binding domain
SMARTSM010194.6E-22284385IPR003340B3 DNA binding domain
PfamPF023622.5E-16284383IPR003340B3 DNA binding domain
PROSITE profilePS5105013.434540590IPR011124Zinc finger, CW-type
PfamPF074962.3E-10545587IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MPQAPNQMWP SPLVKPPQIS ERKDFAIKSW KQMTGPFPGQ WRQASHIWNA SSLQSDLHQR  60
LSYEFDRPTN TERMISGGRN SITAQEKKFE DLPEKLGSSS LNHVARDRYA NGNTCLDPVS  120
AFNIYQREEG SADGLQDRGH LVGENDPLST RKAGISDPCS TSAAVNLENN PNSSVNSLPS  180
SILKEDPSSL LIGLAAQFPS SNGAKDPSRV STTHPQRQAG PPLSKQFCPH NGIDGELQAQ  240
MRNGRPRVDP RARTQLLPRY WPRITDQELQ QISGDSNSVI TPLFEKMLSA SDAGRIGRLV  300
LPKKCAEAYF PAISQPEGLP LKVQDASGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL  360
QAGDTVTFSR IDPEGKLVMG FRKASSVSAE QDTQTGKAGN GFSTSTDGHN KNSATDLNAN  420
LPLRPLKGNT ESRNSINTAD QATWSKFDRS GFIQKDGPTA RSSQGPTKRK GSNLGSKSKR  480
LRMENEDSME LKVTWEEAQE LLRPPPNHVP TIVVIEGIEI EEYEEAPVLG KRTYFTSNQS  540
GDNYQWAQCE DCSKWRKLPV DATLPFGWTC SDNKWDPERS SCSSAQELSL EQLANLIPIK  600
TGASKRSKVK VEADNIEVSD GLDTLANLAI LGEGGALPTS SQPTTKHPRH RPGCTCIVCI  660
QPPSGKGPKH KQTCTCNVCL TVKRRFRTLM LRREKRQSER EAEAARKQQQ QQQQQLIQSP  720
EMLPPLGNDP SSAGPSVSSS PQKAVVNNDG AEEGSECKKT SPSPLKAQID LNIQPEREEE  780
PSPKADAGGM MKLLRDAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-652623912131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1682695KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905089.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2H3Z1B30.0A0A2H3Z1B3_PHODC; B3 domain-containing protein Os07g0563300-like
STRINGXP_008806760.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-154HSI2-like 1