PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905292.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 219aa    MW: 22938.1 Da    PI: 8.1506
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905292.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260971.9e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     p +q +++ +v+k+FG++ ++++++a++e++r+++++sl++eA+ r+ +Pv+Ga+g++++++++l+q+
  XP_010905292.1   2 SCNGCRVLRKGCSETCILRPCLqwiesPVAQGHATVFVAKFFGRAGLMSFISAVSESQRPALFQSLLFEACGRTINPVNGAAGLLWSGNWHLCQA 96 
                     6**********************999999****************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_010905292.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4291107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPV AQGHATVFVA KFFGRAGLMS FISAVSESQR  60
PALFQSLLFE ACGRTINPVN GAAGLLWSGN WHLCQAAVET VLRGGTLKPL PELDPAAADH  120
GAVAAGVGGE GGFLYGRPRA GGWSPSSEAK RRKASAAADD DLAAPQCDLD LCLTPGSPAA  180
VRVQERRRPA TPSMTSEGSV TTSGESGGDR QPRLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905292.11e-158LOW QUALITY PROTEIN: LOB domain-containing protein 37-like
SwissprotQ9SN234e-73LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2H3XQ701e-120A0A2H3XQ70_PHODC; LOB domain-containing protein 37
STRINGXP_008787166.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-72LOB domain-containing protein 38