PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905300.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 672aa    MW: 72492.3 Da    PI: 6.5093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905300.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31264321260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kk++ers+ d++++ei+Y+g+H+h+k
  XP_010905300.1 264 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCQMKKHLERSH-DGQITEIIYKGRHDHPK 321
                     8****************************************.***************85 PP
2WRKY33.86.6e-11439460122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDgy+WrKYGqK+vkg+++pr
  XP_010905300.1 439 LDDGYRWRKYGQKVVKGNPNPR 460
                     59*******************9 PP
3WRKY52.78.7e-174845202359
                     EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     sYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010905300.1 484 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 520
                     8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27256322IPR003657WRKY domain
SuperFamilySSF1182902.09E-24262322IPR003657WRKY domain
PROSITE profilePS5081123.927263322IPR003657WRKY domain
SMARTSM007742.2E-34263321IPR003657WRKY domain
PfamPF031062.3E-23264320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-33424522IPR003657WRKY domain
SuperFamilySSF1182902.22E-21431522IPR003657WRKY domain
PROSITE profilePS5081132.305434522IPR003657WRKY domain
SMARTSM007749.9E-35439521IPR003657WRKY domain
PfamPF031064.6E-7440461IPR003657WRKY domain
PfamPF031068.7E-12484520IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAEDPEADAG DLHVGAPLEG SRGPELGLDG FGEGNGGGSW EGRGGREGRA DPRVSSLAGA  60
RYKSMSPARL PIARSPCLTI SSGLSPSALL ESPVLLTNMK AEPSPTTGTF SMPSLMNKAV  120
CSDTISSPRD SNSNACDEES SAAFEFKRHM RSSMNSGLSP LGALASVNPT QQEQEPSLPV  180
QSQSQTQTSS QIAKAEKATL SSDELTLSVR NPHPPLETLP SAGVPPEVAS DELQQIKGSE  240
NGIQSLQSDH NGSMPSTIIE KSLEDGYNWR KYGQKHVKGS EYPRSYYKCT HPNCQMKKHL  300
ERSHDGQITE IIYKGRHDHP KPQPSRRVAV GALLCTQGEE KPEGLSSLAS PEGKSSTVHI  360
SYPIDPTGAP QLSPISASDD DVEIGGARSH YTGDEVTDGD DPESKRRKMD ATSVDATPIG  420
KPNREPRVVV QTLSEVDILD DGYRWRKYGQ KVVKGNPNPR YCKMRHLSPL RSQICRLRDI  480
KYGSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPAAKTVNHD TSVPTIADGS  540
NTMMTHTSSA LRGFMRNGDT MIISQQYTQP EESDTISLDL GVGISRNHSN TNELQQSPAR  600
DQVHGHQIQS VGSDCSNAMI QANPLSTLYG NSSNGVYGSS EDKSDGFIFR AAPMDCSSNL  660
YYASTGSLVM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32263523878Probable WRKY transcription factor 4
2lex_A1e-32263523878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905301.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2H3YMB20.0A0A2H3YMB2_PHODC; WRKY transcription factor SUSIBA2-like isoform X1
STRINGXP_008800638.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-136WRKY family protein