PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905301.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 649aa    MW: 69672.9 Da    PI: 6.0662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905301.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31264321260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kk++ers+ d++++ei+Y+g+H+h+k
  XP_010905301.1 264 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCQMKKHLERSH-DGQITEIIYKGRHDHPK 321
                     8****************************************.***************85 PP
2WRKY107.18.8e-34439497159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010905301.1 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 497
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27256322IPR003657WRKY domain
SuperFamilySSF1182901.96E-24262322IPR003657WRKY domain
PROSITE profilePS5081123.927263322IPR003657WRKY domain
SMARTSM007742.2E-34263321IPR003657WRKY domain
PfamPF031062.2E-23264320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-38424499IPR003657WRKY domain
SuperFamilySSF1182909.15E-30431499IPR003657WRKY domain
PROSITE profilePS5081139.054434499IPR003657WRKY domain
SMARTSM007744.1E-40439498IPR003657WRKY domain
PfamPF031061.4E-26440497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAEDPEADAG DLHVGAPLEG SRGPELGLDG FGEGNGGGSW EGRGGREGRA DPRVSSLAGA  60
RYKSMSPARL PIARSPCLTI SSGLSPSALL ESPVLLTNMK AEPSPTTGTF SMPSLMNKAV  120
CSDTISSPRD SNSNACDEES SAAFEFKRHM RSSMNSGLSP LGALASVNPT QQEQEPSLPV  180
QSQSQTQTSS QIAKAEKATL SSDELTLSVR NPHPPLETLP SAGVPPEVAS DELQQIKGSE  240
NGIQSLQSDH NGSMPSTIIE KSLEDGYNWR KYGQKHVKGS EYPRSYYKCT HPNCQMKKHL  300
ERSHDGQITE IIYKGRHDHP KPQPSRRVAV GALLCTQGEE KPEGLSSLAS PEGKSSTVHI  360
SYPIDPTGAP QLSPISASDD DVEIGGARSH YTGDEVTDGD DPESKRRKMD ATSVDATPIG  420
KPNREPRVVV QTLSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNAGC PVRKHVERAS  480
HDPKAVITTY EGKHNHDVPA AKTVNHDTSV PTIADGSNTM MTHTSSALRG FMRNGDTMII  540
SQQYTQPEES DTISLDLGVG ISRNHSNTNE LQQSPARDQV HGHQIQSVGS DCSNAMIQAN  600
PLSTLYGNSS NGVYGSSEDK SDGFIFRAAP MDCSSNLYYA STGSLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37263500878Probable WRKY transcription factor 4
2lex_A2e-37263500878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905301.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2H3YMB20.0A0A2H3YMB2_PHODC; WRKY transcription factor SUSIBA2-like isoform X1
STRINGXP_008800638.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-141WRKY family protein