PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905324.1
Common NameGLO2
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24188 Da    PI: 10.0252
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905324.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtfskRrngi+KKA E+SvLCda+v+++ifss+gk+ ey+s
  XP_010905324.1  9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSLVIFSSSGKMSEYCS 59
                    79***********************************************96 PP
2K-box72.31.4e-2471167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq +sgk+l++ k+e+l+ e++++kke++n+q e+Rhl+G dL+sL+ keL  +e+ L+++l+++R k++++l++  ++ +  e+e+++ +  L+
  XP_010905324.1  71 YQVNSGKKLWDVKHENLSVEIDRIKKENDNMQIELRHLKGGDLNSLNPKELILIEDVLQNGLTSVRGKQMDFLKKLKKNERLLEEENKHLTFLLH 165
                     6788999*****************************************************************99888888888888888777777 PP

           K-box  96 kk 97 
                     ++
  XP_010905324.1 166 HQ 167
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-36296IPR002100Transcription factor, MADS-box
CDDcd002651.40E-41280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-1783161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.01984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSLVIFSS SGKMSEYCSP  60
STTLSRLLEK YQVNSGKKLW DVKHENLSVE IDRIKKENDN MQIELRHLKG GDLNSLNPKE  120
LILIEDVLQN GLTSVRGKQM DFLKKLKKNE RLLEEENKHL TFLLHHQELA MNGNVRELEL  180
GDPLKARDFA CQIPIAFRVQ PIQPNLQENK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18171169MEF2 CHIMERA
6byy_B2e-18171169MEF2 CHIMERA
6byy_C2e-18171169MEF2 CHIMERA
6byy_D2e-18171169MEF2 CHIMERA
6bz1_A2e-18171169MEF2 CHIMERA
6bz1_B2e-18171169MEF2 CHIMERA
6bz1_C2e-18171169MEF2 CHIMERA
6bz1_D2e-18171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905324.11e-152MADS-box transcription factor 2 isoform X2
SwissprotQ0HA251e-105MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ5K6A01e-151Q5K6A0_ELAGV; MADS box transcription factor
STRINGXP_008805865.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Adam H, et al.
    MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies.
    J. Mol. Evol., 2006. 62(1): p. 15-31
    [PMID:16320117]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]