PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905422.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YA

Protein Properties

Length: 234aa MW: 25507.1 Da PI: 9.2696

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905422.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.6	4.4e-33	102	158	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF XP_010905422.1 102 EEPVFVNAKQYHGILRRRQSRAKAESENKL-IKTRKPYLHESRHLHALKRARGCGGRF 158 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-37	100	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.047	101	161	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.5E-27	103	158	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-23	104	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	106	126	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.0E-23	135	158	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MTSSVRNISD NSGPSEQQKP AQPEIQHQAS PTGNVQPGMA TPVGYMMPPG HLETGHAVAQ 60 IAYPYVDPYY GGGFAGFGQT VFHPQMMGMQ HPGVPLPTEA VEEPVFVNAK QYHGILRRRQ 120 SRAKAESENK LIKTRKPYLH ESRHLHALKR ARGCGGRFLN SKSEGNQQNS ISNSEGNQQN 180 SNPSSEGNQQ NSNSKFEENQ KNGPKAAVSD DKEKPVSLTN SDKSSLDNKP EATS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	101	164	1	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905422.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701922.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701923.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701924.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701925.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701926.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701927.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_019701929.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_029116906.1	1e-174	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	5e-53	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2H3X503	1e-140	A0A2H3X503_PHODC; nuclear transcription factor Y subunit A-7-like isoform X3
STRING	XP_008794453.1	1e-115	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-55	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]