PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905576.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 891aa    MW: 98410.6 Da    PI: 8.3546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905576.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.9e-19379479199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010905576.1 379 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 471
                     89**************************666667778***************9989999999***9.********************987.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  XP_010905576.1 472 LVMGFRKA 479
                     88777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-30375480IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-20376478IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-22377478No hitNo description
PROSITE profilePS5086311.307379480IPR003340B3 DNA binding domain
PfamPF023626.1E-16379478IPR003340B3 DNA binding domain
SMARTSM010191.2E-21379480IPR003340B3 DNA binding domain
PROSITE profilePS5105013.592635685IPR011124Zinc finger, CW-type
PfamPF074961.5E-10640682IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MASSSSAAAA PAPKICFNSH CKETKSEGPR RKGWRLRSGE FADLCDRCSC VYEKGSFCET  60
FHSDSAGWRN CETCRKRVHC GCIVSASAYV LLDAGGIECF ACARKSVVMT PNQMWSSPLV  120
MPPQLSERKD FPVKSWKQMT GPFPGQWRQA PHFWNTSSIQ SDLHQRLSYE FDRPNNTERM  180
ISGGRTPITA QEKKFEDLPE KIGSSSLNHV ARDRFANGNS GPDPVSAFNT YQREEGNADG  240
LQDPGQLVRD NDPTSTRKGG IPEPCSTSSV DSLPSSTLKE DPSSLLIGLA ASFPPPNGAK  300
DLSRVSTTQP QRQMAPQSSK QFYPHNGIDG ELQAQMRNGR PRVDARARTQ LLPRYWPRIT  360
DQELQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPAISQ PEGLPLKVQD  420
ATGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPEG KLVMGFRKAS  480
NVSAEQDAQS AKAGNGFSTS TEGNNKNLAG DSNANLPLRP LKGSAESRNS INTADQATWS  540
KFDKSGFIQK DGPAARSLQS ASKRKGSTLG PKSKRLRIEN EDSMELKITW EEAQELLRPP  600
PNHVPTTVVI EGHEIEEYEE APVLGKRTYF TTNQAGDNYQ WAQCEDCSKW RKLPVDALLP  660
FRWTCSDNKW DPERSSCSSA QELSLEQLAD LIPIKTGASK RSKVKVEADN IEVSDGLDTL  720
ANLAILGERE ALPTSSQPTT KHPRHRPGCT CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR  780
FRTLMLRREK RQSEREAETA RKQQQLIQSP EMLPPLGNDP SSSAAPSIKS SPQKVVVNDD  840
GVVEEGSEHR KTSPSPLKAQ IDLNIQPERE EEPSPKSDAG GMMRLLRDAA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-653574862131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1777790KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905576.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2H3Z1B30.0A0A2H3Z1B3_PHODC; B3 domain-containing protein Os07g0563300-like
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-158high-level expression of sugar-inducible gene 2