PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905695.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 823aa MW: 93749.9 Da PI: 7.4277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905695.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	125	218	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ ++++++k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel XP_010905695.1 125 EFYCTFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGFPQAKQSDDSKLQRNRKSSRCGCQAYMRIVKRAdfdIPEWRVTGFSNVHNHELL 218 6*************999887455667****************9***************99887676689***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.287.110	1.6E-5	10	37	IPR001623	DnaJ domain
SuperFamily	SSF46565	5.23E-6	11	54	IPR001623	DnaJ domain
CDD	cd06257	9.58E-7	12	37	IPR001623	DnaJ domain
Pfam	PF03101	2.2E-18	125	218	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-22	341	432	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.347	617	653	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.1E-7	624	650	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-4	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MQNPSRPAMH RNPYDVLGVS RFCSSLEIKV AYRKLALSDR TERRRRYDNA GLEASNLSSS 60 LSITDKASEN PGLVIDASDT STDLSSKDVD SIDETPEDTI LSKQTSVNLV PFIGQRFVSQ 120 DAAYEFYCTF AKQCGFSIRR HRTRGKDGVG RGITRRDFTC HRGGFPQAKQ SDDSKLQRNR 180 KSSRCGCQAY MRIVKRADFD IPEWRVTGFS NVHNHELLKS NQVHHLPAYC TISADDKSRI 240 CMFAKAGMSV RQMLRLMELE KGVKLGCLPF TEIDVRNLLR SFKNVDRDHD AIDLLVMCKK 300 FKDEDPNFKY EFKIDGHNRL EHIAWSYASS VQLYEAFGDA VVFDTIHRVD AYDMLLGIWI 360 GVDNHGMNCF FGCVLLRDEN MQSFSWALKT FLGFMKGKAP QTILTDQNMW LKEAISVEMP 420 NTKHAFCIWH IIAKFSDWFS VLLGSRYDNW KAEFHRLYTM DVVEEFEVEW KEMVNAYALH 480 TNKHIASLYA LRTFWALPYL RCYFFAGMTS TVHSESVNAF IQQFLSAQSQ LDHFVEQVAV 540 ILDSKDQVVA KQKSQRKPNK ICLKTGSPIE SHAASVLTPY AFCKLQEELV LAPQYASFPI 600 EDGCFLVRHH KQVDGGCKVI WAPQEELISC SCHHFEFTGI LCRHVLRILS TNNCFHIPDE 660 YLPIRWRCIN MPLTRCSRTA LREHAERVHL LQSLVSTLLA ESVESEERLE IASEQVATVL 720 SRIREFPGST HGMNGTAYGS PSESLIIPEV EDSDGIIRSF AAGQTHESCT LGKLKERRAR 780 DGVEMSRKRR HYPTPCCGRF GNDANDCPMM GTEGLNGDDL GFL

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MQNPSRPAMH RNPYDVLGVS RFCSSLEIKV AYRKLALSDR TERRRRYDNA GLEASNLSSS  60
LSITDKASEN PGLVIDASDT STDLSSKDVD SIDETPEDTI LSKQTSVNLV PFIGQRFVSQ  120
DAAYEFYCTF AKQCGFSIRR HRTRGKDGVG RGITRRDFTC HRGGFPQAKQ SDDSKLQRNR  180
KSSRCGCQAY MRIVKRADFD IPEWRVTGFS NVHNHELLKS NQVHHLPAYC TISADDKSRI  240
CMFAKAGMSV RQMLRLMELE KGVKLGCLPF TEIDVRNLLR SFKNVDRDHD AIDLLVMCKK  300
FKDEDPNFKY EFKIDGHNRL EHIAWSYASS VQLYEAFGDA VVFDTIHRVD AYDMLLGIWI  360
GVDNHGMNCF FGCVLLRDEN MQSFSWALKT FLGFMKGKAP QTILTDQNMW LKEAISVEMP  420
NTKHAFCIWH IIAKFSDWFS VLLGSRYDNW KAEFHRLYTM DVVEEFEVEW KEMVNAYALH  480
TNKHIASLYA LRTFWALPYL RCYFFAGMTS TVHSESVNAF IQQFLSAQSQ LDHFVEQVAV  540
ILDSKDQVVA KQKSQRKPNK ICLKTGSPIE SHAASVLTPY AFCKLQEELV LAPQYASFPI  600
EDGCFLVRHH KQVDGGCKVI WAPQEELISC SCHHFEFTGI LCRHVLRILS TNNCFHIPDE  660
YLPIRWRCIN MPLTRCSRTA LREHAERVHL LQSLVSTLLA ESVESEERLE IASEQVATVL  720
SRIREFPGST HGMNGTAYGS PSESLIIPEV EDSDGIIRSF AAGQTHESCT LGKLKERRAR  780
DGVEMSRKRR HYPTPCCGRF GNDANDCPMM GTEGLNGDDL GFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	ERRRRY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905695.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3Z3S9	0.0	A0A2H3Z3S9_PHODC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_008807776.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]