PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905711.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 258aa    MW: 29744.6 Da    PI: 6.3684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905711.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-151062148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g       +t+k+c++rw +yl
   XP_010905711.1 10 KGPWTEQEDQQLVCFVGLFGERRWDFIAKVSGlrgggGYKTGKSCRLRWVNYL 62
                     79***********************************999***********97 PP
2Myb_DNA-binding56.18.5e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_010905711.1  68 RGRMTPQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.677562IPR017930Myb domain
SMARTSM007173.4E-15964IPR001005SANT/Myb domain
SuperFamilySSF466896.34E-289109IPR009057Homeodomain-like
PfamPF002493.6E-141062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-181169IPR009057Homeodomain-like
CDDcd001673.15E-101262No hitNo description
PROSITE profilePS5129426.65263117IPR017930Myb domain
SMARTSM007179.7E-1767115IPR001005SANT/Myb domain
PfamPF002498.8E-1668112IPR001005SANT/Myb domain
CDDcd001672.94E-1170113No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVTVKEETRK GPWTEQEDQQ LVCFVGLFGE RRWDFIAKVS GLRGGGGYKT GKSCRLRWVN  60
YLHPGLKRGR MTPQEERLIL ELHSRWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER  120
KREAISPSSS SSSLTYQSPS LSEPPSEVGL ERQHELNKAG GCCCMTAGLD EEEEGAKGYY  180
SMDQIWNELA TTPEAISGLS LEECKVEVCD TSWPPMPSPI WEYSSEPLWK MDDEEFKMFP  240
PVDDLLVSNY QHGREFCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2971171105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905710.11e-179myb-related protein MYBAS2 isoform X1
SwissprotQ4JL843e-80MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A2H3X0991e-149A0A2H3X099_PHODC; myb-related protein MYBAS2-like
STRINGXP_008776389.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-75myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]