PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905714.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 155aa    MW: 17514.2 Da    PI: 10.5937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905714.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00184466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+++F++   L  H  +H
  XP_010905714.1 44 FECKTCSRRFPSFQALGGHRTSH 66
                    89**********99998888777 PP
2zf-C2H216.42.6e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg++Fs    L  H+r+H
  XP_010905714.1  89 HECSICGQRFSMGQALGGHMRRH 111
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-54170No hitNo description
PROSITE profilePS501579.914471IPR007087Zinc finger, C2H2
PfamPF139124.2E-124468IPR007087Zinc finger, C2H2
SMARTSM003550.324466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-687113No hitNo description
PfamPF139121.2E-1188113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20189116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKRLRAEEQG EMETIKTANL LLSLSREGTP EKMHRRTKPE DGMFECKTCS RRFPSFQALG  60
GHRTSHKRPR LQGLGLDPLH GSRLKPTAHE CSICGQRFSM GQALGGHMRR HRPSGEAFPE  120
KKAGVAKSML DFNLIPLEND RSTETFRGVL LELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788150.17e-70zinc finger protein ZAT11-like
TrEMBLA0A2H3XSQ12e-68A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like
STRINGXP_008776407.12e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-32C2H2 family protein