PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905884.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24691.2 Da    PI: 5.4864
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905884.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.91.2e-1694147356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++++ q   Lee+F+kn+ +  +e+eeLA+kl++  rqV vW+qN++ ++k
  XP_010905884.1  94 KKLRLSPAQALLLEEAFKKNPILESTEKEELAAKLDILPRQVEVWYQNHKVRMK 147
                     667899**********************************************99 PP
2HD-ZIP_I/II83.72.7e-2794181290
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     kk+rls  q+ lLEe F+++  Le+++K+ela +L++ prqv+vW+qn++ R+k++q+E++ + Lk++++ l een rL++e e+Lr +
  XP_010905884.1  94 KKLRLSPAQALLLEEAFKKNPILESTEKEELAAKLDILPRQVEVWYQNHKVRMKARQMETENACLKQQCQLLIEENIRLRREIERLR-A 181
                     9*************************************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.18E-1580150IPR009057Homeodomain-like
PROSITE profilePS5007114.59289149IPR001356Homeobox domain
SMARTSM003893.5E-1191153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1591155IPR009057Homeodomain-like
CDDcd000862.78E-1194152No hitNo description
PfamPF000467.4E-1494147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SMARTSM003404.4E-5149192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEVADEVSVV GDSRHMAELK LQKRQQPSSG IRSEVEQYMV AAKVEAGKFE ITESVQREEN  60
SGHNMRDIDI NQPAPEAVEE PINNDMVKEG TKPKKLRLSP AQALLLEEAF KKNPILESTE  120
KEELAAKLDI LPRQVEVWYQ NHKVRMKARQ METENACLKQ QCQLLIEENI RLRREIERLR  180
ALEMPPPNST VTMCLGAGSV APMPGASNTN LQPQPPSTK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905884.11e-160homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX13e-28HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-28HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLM0U9752e-28M0U975_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP14660_0013e-29(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-17homeobox from Arabidopsis thaliana