PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905885.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 651aa MW: 73198.7 Da PI: 4.151

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905885.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.4e-08	375	423	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++l+ ++v + W+ ++ ++ R+ k+++s+++++ XP_010905885.1 375 KKWTEEEEQLFQEVVLSNPASlgknFWNHLPQVLP-SRSSKELVSYYFNV 423 58***********6654445555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.001	373	426	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.91E-5	375	424	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-6	375	423	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.446	376	424	IPR017877	Myb-like domain
CDD	cd00167	7.50E-8	376	424	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-4	376	422	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MVFKHNKHPF ADIDPNQLAY EDLRQFDYDG QVASFEEISS FRGILQKSVT SDGERENAFT 60 KTQGELRVGG DSSTVISVVT NKEYENRTAD TTNDNFAPAL GDTSIMVGVS GSTSEVVMSE 120 HSKRPMCDDE AYRVESKRPK QVYENKKLDS FPEFPFSTCK ELLTSVASDR ELGNEEVAAV 180 PEDPAKKATS SHMPWIIYSR SEEVTNLDSG VSVHFLPSYL EEYQRAQGFH QVEELYSPLF 240 DYLPRKPVAI GSNHQADIPE WRSRDFRNSF KDSDDCVSSP LTSMTCSSSA VHHMIDEDDS 300 DKWVGTCVMP MLYSDSLASE IGSMHCKTDC SCLDKGSIQC VRQHVTEARE KLRRMLGEGR 360 FEELGFNDMG EDVAKKWTEE EEQLFQEVVL SNPASLGKNF WNHLPQVLPS RSSKELVSYY 420 FNVFMLRKRA EQNRSDPLNV DSDNDEWQES DDGEFATTEE DEEDSVVESL ANQGDPACDK 480 DGPEATDINE DADDEDECDD YPIADKNEEA LCGISERCVN NKSKFCSTVQ LIDEKLQNGV 540 EQDFRDDSCM SYEGQHNGAD SCGGAADNLD TQHSLIEDHD NLLEEYRNDG ASDMTDHEFF 600 DGPCDPKTWD INYTHGAGKD DFLSTCNVIE EVFGKGAWEN DARDNHGVSK P

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MVFKHNKHPF ADIDPNQLAY EDLRQFDYDG QVASFEEISS FRGILQKSVT SDGERENAFT  60
KTQGELRVGG DSSTVISVVT NKEYENRTAD TTNDNFAPAL GDTSIMVGVS GSTSEVVMSE  120
HSKRPMCDDE AYRVESKRPK QVYENKKLDS FPEFPFSTCK ELLTSVASDR ELGNEEVAAV  180
PEDPAKKATS SHMPWIIYSR SEEVTNLDSG VSVHFLPSYL EEYQRAQGFH QVEELYSPLF  240
DYLPRKPVAI GSNHQADIPE WRSRDFRNSF KDSDDCVSSP LTSMTCSSSA VHHMIDEDDS  300
DKWVGTCVMP MLYSDSLASE IGSMHCKTDC SCLDKGSIQC VRQHVTEARE KLRRMLGEGR  360
FEELGFNDMG EDVAKKWTEE EEQLFQEVVL SNPASLGKNF WNHLPQVLPS RSSKELVSYY  420
FNVFMLRKRA EQNRSDPLNV DSDNDEWQES DDGEFATTEE DEEDSVVESL ANQGDPACDK  480
DGPEATDINE DADDEDECDD YPIADKNEEA LCGISERCVN NKSKFCSTVQ LIDEKLQNGV  540
EQDFRDDSCM SYEGQHNGAD SCGGAADNLD TQHSLIEDHD NLLEEYRNDG ASDMTDHEFF  600
DGPCDPKTWD INYTHGAGKD DFLSTCNVIE EVFGKGAWEN DARDNHGVSK P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905885.1	0.0	uncharacterized protein LOC105032976
TrEMBL	A0A2H3X0G4	0.0	A0A2H3X0G4_PHODC; uncharacterized protein LOC103696583
STRING	XP_008776476.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11684	4	6