PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010905949.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 382aa MW: 42396.9 Da PI: 8.9381

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010905949.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.5e-11	92	135	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +++k+ rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_010905949.1 92 PADKVLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQEL 135 689****************************9777777666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.1E-8	87	137	No hit	No description
SMART	SM00338	2.7E-8	91	154	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.013	93	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.7E-8	93	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-7	95	137	No hit	No description
CDD	cd14708	1.38E-21	95	147	No hit	No description
PROSITE pattern	PS00036	0	98	113	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	182	256	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MLQGPAGAFH VISSPNSMSS ASAQFATSRR MGIYEPNHQI SMWGDSFKAD SSQNTGASTI 60 VEADAKHDNR LGDIPRESSG PSKKYDQEAH KPADKVLRRL AQNREAARKS RLRKKAYVQQ 120 LESSRLKLSQ LEQELERARQ QGVYVGGHLG DSTLGLSGTV NSGVAAFEME YGHWVEEQNR 180 QTCELRTALQ AHVSDIELRM LVESGMSHYD NLFRIKAIAA KSDVFYLMSG MWKTSAERFF 240 LWIGGFRPSE LLKVLSPQLD PLTEQQVVAV CNLQQSSQQA EDALSQGMDK LQQTLAETLT 300 SDPLGASGVA NYMGQMANAM GKLEALVSFV NQADHLRQQT LQQMYKILTT RQAARGLLAL 360 GDYFQRLRAL SSLWAARPRE PA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MLQGPAGAFH VISSPNSMSS ASAQFATSRR MGIYEPNHQI SMWGDSFKAD SSQNTGASTI  60
VEADAKHDNR LGDIPRESSG PSKKYDQEAH KPADKVLRRL AQNREAARKS RLRKKAYVQQ  120
LESSRLKLSQ LEQELERARQ QGVYVGGHLG DSTLGLSGTV NSGVAAFEME YGHWVEEQNR  180
QTCELRTALQ AHVSDIELRM LVESGMSHYD NLFRIKAIAA KSDVFYLMSG MWKTSAERFF  240
LWIGGFRPSE LLKVLSPQLD PLTEQQVVAV CNLQQSSQQA EDALSQGMDK LQQTLAETLT  300
SDPLGASGVA NYMGQMANAM GKLEALVSFV NQADHLRQQT LQQMYKILTT RQAARGLLAL  360
GDYFQRLRAL SSLWAARPRE PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905949.1	0.0	transcription factor TGA4 isoform X2
Swissprot	Q39237	1e-172	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2H3YN86	0.0	A0A2H3YN86_PHODC; transcription factor TGA4-like isoform X1
STRING	XP_008801018.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-162	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]